miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5263 5' -64.6 NC_001798.1 + 4846 0.66 0.582357
Target:  5'- gCGGCGGGGCgaCgGuCCGGguucggggugggcgGCGGUCc -3'
miRNA:   3'- -GCCGCCCCGggGgCuGGCU--------------UGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 153166 0.66 0.575745
Target:  5'- uCGGagcucCGGGGCuCCgCCGGCCGAGgccgcccucgcCGGUUc -3'
miRNA:   3'- -GCC-----GCCCCG-GG-GGCUGGCUU-----------GCCAGa -5'
5263 5' -64.6 NC_001798.1 + 140216 0.66 0.575745
Target:  5'- uGcGUGGGGUCgCCGACCcaGACGGcCUc -3'
miRNA:   3'- gC-CGCCCCGGgGGCUGGc-UUGCCaGA- -5'
5263 5' -64.6 NC_001798.1 + 9152 0.66 0.575745
Target:  5'- gGGCGcGGcGCCgCCCGcGCCGGggggcAgGGUCUc -3'
miRNA:   3'- gCCGC-CC-CGG-GGGC-UGGCU-----UgCCAGA- -5'
5263 5' -64.6 NC_001798.1 + 2430 0.66 0.575745
Target:  5'- uGGCuGGGCCCCggCGGCUG-GCGG-Cg -3'
miRNA:   3'- gCCGcCCCGGGG--GCUGGCuUGCCaGa -5'
5263 5' -64.6 NC_001798.1 + 27204 0.66 0.566328
Target:  5'- gGGCGGGggaaGCCCCCGggGCgGGgcGCGGg-- -3'
miRNA:   3'- gCCGCCC----CGGGGGC--UGgCU--UGCCaga -5'
5263 5' -64.6 NC_001798.1 + 68378 0.66 0.566328
Target:  5'- gCGGUaGGGcGCCCCCGcagauCCGGcugccaGCGGUa- -3'
miRNA:   3'- -GCCG-CCC-CGGGGGCu----GGCU------UGCCAga -5'
5263 5' -64.6 NC_001798.1 + 51751 0.66 0.566328
Target:  5'- uCGGCGGGcaaaaaccaGCCCCUcccGCgCGAugGGUUUu -3'
miRNA:   3'- -GCCGCCC---------CGGGGGc--UG-GCUugCCAGA- -5'
5263 5' -64.6 NC_001798.1 + 27336 0.67 0.510836
Target:  5'- uGGCGGGGaaCCgUGugCGGGCGGg-- -3'
miRNA:   3'- gCCGCCCCg-GGgGCugGCUUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 121257 0.67 0.509929
Target:  5'- gCGGCGGGggucccgcuguccGCCCUCGugCGcggccgccccGACGGUg- -3'
miRNA:   3'- -GCCGCCC-------------CGGGGGCugGC----------UUGCCAga -5'
5263 5' -64.6 NC_001798.1 + 150138 0.67 0.508118
Target:  5'- -cGCGGGGCCCgaguCCGACCcgcgccucuuccggGGGCGGg-- -3'
miRNA:   3'- gcCGCCCCGGG----GGCUGG--------------CUUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 150620 0.67 0.501798
Target:  5'- uGG-GGGGCUCCUgGGCCGcGCGGggCUg -3'
miRNA:   3'- gCCgCCCCGGGGG-CUGGCuUGCCa-GA- -5'
5263 5' -64.6 NC_001798.1 + 115735 0.67 0.501798
Target:  5'- cCGGCGGcGaagucCCCCCGGCCGGucCGGgggCa -3'
miRNA:   3'- -GCCGCC-Cc----GGGGGCUGGCUu-GCCa--Ga -5'
5263 5' -64.6 NC_001798.1 + 70451 0.67 0.510836
Target:  5'- uGGCGGuGGCgcuCCCCGAgacccCCGAgGCGGcCUu -3'
miRNA:   3'- gCCGCC-CCG---GGGGCU-----GGCU-UGCCaGA- -5'
5263 5' -64.6 NC_001798.1 + 46408 0.67 0.510836
Target:  5'- cCGGCaGGGCCaCCGcCCccccGGCGGUCg -3'
miRNA:   3'- -GCCGcCCCGGgGGCuGGc---UUGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 111726 0.67 0.519028
Target:  5'- aCGGUGGcccgcuuGGCCCCCGcgcccCCGGcccCGGUCc -3'
miRNA:   3'- -GCCGCC-------CCGGGGGCu----GGCUu--GCCAGa -5'
5263 5' -64.6 NC_001798.1 + 78971 0.67 0.519028
Target:  5'- cCGGgGGGGCgCCUGGaagucccCCGAGgGGUUc -3'
miRNA:   3'- -GCCgCCCCGgGGGCU-------GGCUUgCCAGa -5'
5263 5' -64.6 NC_001798.1 + 28817 0.67 0.519942
Target:  5'- cCGcCGcGGGCCCgggCCG-UCGGGCGGUCUa -3'
miRNA:   3'- -GCcGC-CCCGGG---GGCuGGCUUGCCAGA- -5'
5263 5' -64.6 NC_001798.1 + 43054 0.67 0.519942
Target:  5'- gCGGCGcGuGaGCCgCCGGCCGAGCGcGcCg -3'
miRNA:   3'- -GCCGC-C-C-CGGgGGCUGGCUUGC-CaGa -5'
5263 5' -64.6 NC_001798.1 + 111589 0.67 0.501798
Target:  5'- uGaGCGGGGggCCCGGCgGGGCGGcCUc -3'
miRNA:   3'- gC-CGCCCCggGGGCUGgCUUGCCaGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.