miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5263 5' -64.6 NC_001798.1 + 114490 0.71 0.292407
Target:  5'- aCGGgGGaGGCCCUgGACgGGACGGg-- -3'
miRNA:   3'- -GCCgCC-CCGGGGgCUGgCUUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 132160 0.7 0.325499
Target:  5'- gGGCGGGGCgCCCCccCCGGACGc--- -3'
miRNA:   3'- gCCGCCCCG-GGGGcuGGCUUGCcaga -5'
5263 5' -64.6 NC_001798.1 + 34857 0.7 0.325499
Target:  5'- gGGCGGGGgacgccuuCCgCCCGgcGCCGGGCGG-CUa -3'
miRNA:   3'- gCCGCCCC--------GG-GGGC--UGGCUUGCCaGA- -5'
5263 5' -64.6 NC_001798.1 + 23577 0.7 0.332443
Target:  5'- cCGGgGGcGGCgCCCCGGCCGAGCc---- -3'
miRNA:   3'- -GCCgCC-CCG-GGGGCUGGCUUGccaga -5'
5263 5' -64.6 NC_001798.1 + 11183 0.7 0.346654
Target:  5'- gCGGUGGGGCgggCCUG-CCGAACGGcCc -3'
miRNA:   3'- -GCCGCCCCGg--GGGCuGGCUUGCCaGa -5'
5263 5' -64.6 NC_001798.1 + 102617 0.7 0.346654
Target:  5'- aGGCGGGGauccacaaauaaCUCCCGucGCCGGGCGG-Cg -3'
miRNA:   3'- gCCGCCCC------------GGGGGC--UGGCUUGCCaGa -5'
5263 5' -64.6 NC_001798.1 + 127937 0.7 0.346654
Target:  5'- aCGGCGGGGCCCCgGG-CGAAaaggccCGGcCc -3'
miRNA:   3'- -GCCGCCCCGGGGgCUgGCUU------GCCaGa -5'
5263 5' -64.6 NC_001798.1 + 29935 0.7 0.349547
Target:  5'- gGGCGGGacgcuugacggggccGaCCCCCGGCCcgcuuaAGCGGUCg -3'
miRNA:   3'- gCCGCCC---------------C-GGGGGCUGGc-----UUGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 105193 0.7 0.35392
Target:  5'- gCGGCGGGGCCCgCGGUgGGcgACGGcgCUg -3'
miRNA:   3'- -GCCGCCCCGGGgGCUGgCU--UGCCa-GA- -5'
5263 5' -64.6 NC_001798.1 + 102659 0.7 0.361294
Target:  5'- gGGcCGGGGCgCCCGauGCCGaAACGGg-- -3'
miRNA:   3'- gCC-GCCCCGgGGGC--UGGC-UUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 45800 0.7 0.361294
Target:  5'- --cCGGGGCCccaucuggCCCGACgCGAggcGCGGUCUa -3'
miRNA:   3'- gccGCCCCGG--------GGGCUG-GCU---UGCCAGA- -5'
5263 5' -64.6 NC_001798.1 + 24413 0.69 0.375596
Target:  5'- uCGGCGGcGGCgUCgCCGGCCGAcgagcgcGCGGUg- -3'
miRNA:   3'- -GCCGCC-CCG-GG-GGCUGGCU-------UGCCAga -5'
5263 5' -64.6 NC_001798.1 + 56400 0.69 0.38405
Target:  5'- uCGGUGGGGUCCCgCGGCgGGGgcUGGUg- -3'
miRNA:   3'- -GCCGCCCCGGGG-GCUGgCUU--GCCAga -5'
5263 5' -64.6 NC_001798.1 + 97664 0.69 0.38405
Target:  5'- cCGGCGGcuguacgcGGaCCgCCUGACCaAGCGGUCg -3'
miRNA:   3'- -GCCGCC--------CC-GG-GGGCUGGcUUGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 51188 0.69 0.399739
Target:  5'- gCGGCGGcGCCCCCccGCCGGGC-GUCc -3'
miRNA:   3'- -GCCGCCcCGGGGGc-UGGCUUGcCAGa -5'
5263 5' -64.6 NC_001798.1 + 137923 0.69 0.399739
Target:  5'- gGGCGGcccgcgccuCCCCCGGCCGccCGGUCc -3'
miRNA:   3'- gCCGCCcc-------GGGGGCUGGCuuGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 110908 0.69 0.399739
Target:  5'- gCGuGCGGccagccGCCCCCG-CCGGcccGCGGUCa -3'
miRNA:   3'- -GC-CGCCc-----CGGGGGCuGGCU---UGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 150005 0.69 0.407735
Target:  5'- gGGCGaGcGGCCCgUGGCC--GCGGUCg -3'
miRNA:   3'- gCCGC-C-CCGGGgGCUGGcuUGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 78266 0.69 0.407735
Target:  5'- uCGGCGGcGuGCCCCUGgACCuGGCGGcCg -3'
miRNA:   3'- -GCCGCC-C-CGGGGGC-UGGcUUGCCaGa -5'
5263 5' -64.6 NC_001798.1 + 152183 0.69 0.415831
Target:  5'- aGGgGGGGCCUgaGACCcGGgGGUCg -3'
miRNA:   3'- gCCgCCCCGGGggCUGGcUUgCCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.