miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5263 5' -64.6 NC_001798.1 + 27204 0.66 0.566328
Target:  5'- gGGCGGGggaaGCCCCCGggGCgGGgcGCGGg-- -3'
miRNA:   3'- gCCGCCC----CGGGGGC--UGgCU--UGCCaga -5'
5263 5' -64.6 NC_001798.1 + 27336 0.67 0.510836
Target:  5'- uGGCGGGGaaCCgUGugCGGGCGGg-- -3'
miRNA:   3'- gCCGCCCCg-GGgGCugGCUUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 27918 0.67 0.483937
Target:  5'- cCGcCGGGGUCCCCGccGCCGG--GGUCc -3'
miRNA:   3'- -GCcGCCCCGGGGGC--UGGCUugCCAGa -5'
5263 5' -64.6 NC_001798.1 + 28355 0.66 0.547619
Target:  5'- cCGGCGGcGGCCCCCcgcguccCCGcccGCGGa-- -3'
miRNA:   3'- -GCCGCC-CCGGGGGcu-----GGCu--UGCCaga -5'
5263 5' -64.6 NC_001798.1 + 28817 0.67 0.519942
Target:  5'- cCGcCGcGGGCCCgggCCG-UCGGGCGGUCUa -3'
miRNA:   3'- -GCcGC-CCCGGG---GGCuGGCUUGCCAGA- -5'
5263 5' -64.6 NC_001798.1 + 28875 0.72 0.256241
Target:  5'- cCGGCGGaGCCCCgGAgcuCCGAA-GGUCUg -3'
miRNA:   3'- -GCCGCCcCGGGGgCU---GGCUUgCCAGA- -5'
5263 5' -64.6 NC_001798.1 + 29599 0.66 0.547619
Target:  5'- aGGCGccGGGUauaaggcagCCCCGugUGA-CGGUCg -3'
miRNA:   3'- gCCGC--CCCG---------GGGGCugGCUuGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 29799 0.66 0.538337
Target:  5'- gGGCGGa--CCCCGGCCccGAGCGGcCg -3'
miRNA:   3'- gCCGCCccgGGGGCUGG--CUUGCCaGa -5'
5263 5' -64.6 NC_001798.1 + 29935 0.7 0.349547
Target:  5'- gGGCGGGacgcuugacggggccGaCCCCCGGCCcgcuuaAGCGGUCg -3'
miRNA:   3'- gCCGCCC---------------C-GGGGGCUGGc-----UUGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 30435 0.75 0.169397
Target:  5'- cCGGCccGGCCCCCGGCCGAGCGc--- -3'
miRNA:   3'- -GCCGccCCGGGGGCUGGCUUGCcaga -5'
5263 5' -64.6 NC_001798.1 + 31878 0.68 0.432315
Target:  5'- gCGGCGGcccGCCCCCGGaaGAggcGCgGGUCg -3'
miRNA:   3'- -GCCGCCc--CGGGGGCUggCU---UG-CCAGa -5'
5263 5' -64.6 NC_001798.1 + 31997 0.66 0.58425
Target:  5'- gCGGCGccgcgccGGGCCCCgGACuCGGAcuCGGg-- -3'
miRNA:   3'- -GCCGC-------CCCGGGGgCUG-GCUU--GCCaga -5'
5263 5' -64.6 NC_001798.1 + 34810 0.67 0.483937
Target:  5'- gGGCcccGGGGCCCCCGcgcuccGCCGGGggccCGGg-- -3'
miRNA:   3'- gCCG---CCCCGGGGGC------UGGCUU----GCCaga -5'
5263 5' -64.6 NC_001798.1 + 34857 0.7 0.325499
Target:  5'- gGGCGGGGgacgccuuCCgCCCGgcGCCGGGCGG-CUa -3'
miRNA:   3'- gCCGCCCC--------GG-GGGC--UGGCUUGCCaGA- -5'
5263 5' -64.6 NC_001798.1 + 34984 0.68 0.466387
Target:  5'- aGGUgcgGGGGCCCcuCCGGCCGGggcgcaccucgGCGGcCa -3'
miRNA:   3'- gCCG---CCCCGGG--GGCUGGCU-----------UGCCaGa -5'
5263 5' -64.6 NC_001798.1 + 36398 0.77 0.121102
Target:  5'- gCGGCgccGGGGCCCCCcuGCCGGGCGGg-- -3'
miRNA:   3'- -GCCG---CCCCGGGGGc-UGGCUUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 36515 0.68 0.440698
Target:  5'- gGGCGGGGgCgCgcggCGGCCGGGCGGgggCg -3'
miRNA:   3'- gCCGCCCCgGgG----GCUGGCUUGCCa--Ga -5'
5263 5' -64.6 NC_001798.1 + 36557 0.68 0.440698
Target:  5'- gGGCGGGGgCgCgcggCGGCCGGGCGGgggCg -3'
miRNA:   3'- gCCGCCCCgGgG----GCUGGCUUGCCa--Ga -5'
5263 5' -64.6 NC_001798.1 + 36599 0.68 0.440698
Target:  5'- gGGCGGGGgCgCgcggCGGCCGGGCGGgggCg -3'
miRNA:   3'- gCCGCCCCgGgG----GCUGGCUUGCCa--Ga -5'
5263 5' -64.6 NC_001798.1 + 38434 0.74 0.181778
Target:  5'- gGGcCGGGGCCCCacauuuauCCGGugGGUCa -3'
miRNA:   3'- gCC-GCCCCGGGGgcu-----GGCUugCCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.