miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5263 5' -64.6 NC_001798.1 + 2095 0.68 0.432315
Target:  5'- cCGGgGGGggcccGCCCCCGGCgCGGcccGCGGcCa -3'
miRNA:   3'- -GCCgCCC-----CGGGGGCUG-GCU---UGCCaGa -5'
5263 5' -64.6 NC_001798.1 + 2430 0.66 0.575745
Target:  5'- uGGCuGGGCCCCggCGGCUG-GCGG-Cg -3'
miRNA:   3'- gCCGcCCCGGGG--GCUGGCuUGCCaGa -5'
5263 5' -64.6 NC_001798.1 + 2469 0.73 0.208958
Target:  5'- gGGuCGGGGCCCUCGGCgGGccgGCgGGUCa -3'
miRNA:   3'- gCC-GCCCCGGGGGCUGgCU---UG-CCAGa -5'
5263 5' -64.6 NC_001798.1 + 2546 0.67 0.4991
Target:  5'- gGGCGcGGCCCCCGcgggaggggcggccGCgGGGCGGg-- -3'
miRNA:   3'- gCCGCcCCGGGGGC--------------UGgCUUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 2611 0.66 0.554146
Target:  5'- gGcGCGGGGCgccgcccggcggcgCCCUGGCCgGGGCGGggCUc -3'
miRNA:   3'- gC-CGCCCCG--------------GGGGCUGG-CUUGCCa-GA- -5'
5263 5' -64.6 NC_001798.1 + 2980 0.68 0.449173
Target:  5'- gCGGCGGGGCggCCGGCCc-GCGGg-- -3'
miRNA:   3'- -GCCGCCCCGggGGCUGGcuUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 3020 0.67 0.490155
Target:  5'- gCGGCGGGccgggcuccggccaGCCCCggcaCGGCCGccaGGUCg -3'
miRNA:   3'- -GCCGCCC--------------CGGGG----GCUGGCuugCCAGa -5'
5263 5' -64.6 NC_001798.1 + 3993 0.71 0.286113
Target:  5'- cCGcCGGGGCCgCCCGGCCGugaAGCGGcCc -3'
miRNA:   3'- -GCcGCCCCGG-GGGCUGGC---UUGCCaGa -5'
5263 5' -64.6 NC_001798.1 + 4056 0.66 0.538337
Target:  5'- cCGGCGGcGCUCCaggCGGCCc-GCGGUCg -3'
miRNA:   3'- -GCCGCCcCGGGG---GCUGGcuUGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 4846 0.66 0.582357
Target:  5'- gCGGCGGGGCgaCgGuCCGGguucggggugggcgGCGGUCc -3'
miRNA:   3'- -GCCGCCCCGggGgCuGGCU--------------UGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 9152 0.66 0.575745
Target:  5'- gGGCGcGGcGCCgCCCGcGCCGGggggcAgGGUCUc -3'
miRNA:   3'- gCCGC-CC-CGG-GGGC-UGGCU-----UgCCAGA- -5'
5263 5' -64.6 NC_001798.1 + 11183 0.7 0.346654
Target:  5'- gCGGUGGGGCgggCCUG-CCGAACGGcCc -3'
miRNA:   3'- -GCCGCCCCGg--GGGCuGGCUUGCCaGa -5'
5263 5' -64.6 NC_001798.1 + 15270 0.66 0.585196
Target:  5'- gGGCGGuGCCCCgGGuuCCGGGCguggcgguGGUCg -3'
miRNA:   3'- gCCGCCcCGGGGgCU--GGCUUG--------CCAGa -5'
5263 5' -64.6 NC_001798.1 + 15386 0.69 0.415831
Target:  5'- gCGGCGGaGGCgCCC-ACCGGACccggGGUUg -3'
miRNA:   3'- -GCCGCC-CCGgGGGcUGGCUUG----CCAGa -5'
5263 5' -64.6 NC_001798.1 + 18314 0.68 0.449173
Target:  5'- aGGcCGGGGCCguguuugucUCCGGCgGGACGGa-- -3'
miRNA:   3'- gCC-GCCCCGG---------GGGCUGgCUUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 19161 0.68 0.432315
Target:  5'- gGGUGGgggaaccguGGCCCCUGcCCGAuCGGUUUu -3'
miRNA:   3'- gCCGCC---------CCGGGGGCuGGCUuGCCAGA- -5'
5263 5' -64.6 NC_001798.1 + 23525 0.68 0.432315
Target:  5'- gGGCGGGaCCCUCGGCgCGGACGa--- -3'
miRNA:   3'- gCCGCCCcGGGGGCUG-GCUUGCcaga -5'
5263 5' -64.6 NC_001798.1 + 23577 0.7 0.332443
Target:  5'- cCGGgGGcGGCgCCCCGGCCGAGCc---- -3'
miRNA:   3'- -GCCgCC-CCG-GGGGCUGGCUUGccaga -5'
5263 5' -64.6 NC_001798.1 + 24413 0.69 0.375596
Target:  5'- uCGGCGGcGGCgUCgCCGGCCGAcgagcgcGCGGUg- -3'
miRNA:   3'- -GCCGCC-CCG-GG-GGCUGGCU-------UGCCAga -5'
5263 5' -64.6 NC_001798.1 + 25614 0.68 0.432315
Target:  5'- gGGC-GGGCCCCCc-CCGGAgUGGUCc -3'
miRNA:   3'- gCCGcCCCGGGGGcuGGCUU-GCCAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.