miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5263 5' -64.6 NC_001798.1 + 154127 0.74 0.204196
Target:  5'- gCGGCGGGGaCCCCGGCggcgggacauggCGGGCGG-CUg -3'
miRNA:   3'- -GCCGCCCCgGGGGCUG------------GCUUGCCaGA- -5'
5263 5' -64.6 NC_001798.1 + 153166 0.66 0.575745
Target:  5'- uCGGagcucCGGGGCuCCgCCGGCCGAGgccgcccucgcCGGUUc -3'
miRNA:   3'- -GCC-----GCCCCG-GG-GGCUGGCUU-----------GCCAGa -5'
5263 5' -64.6 NC_001798.1 + 152183 0.69 0.415831
Target:  5'- aGGgGGGGCCUgaGACCcGGgGGUCg -3'
miRNA:   3'- gCCgCCCCGGGggCUGGcUUgCCAGa -5'
5263 5' -64.6 NC_001798.1 + 152062 0.74 0.199529
Target:  5'- aCGGCccacgGGGGuCCCCCGACCGcuuaAGCGGg-- -3'
miRNA:   3'- -GCCG-----CCCC-GGGGGCUGGC----UUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 151853 0.66 0.547619
Target:  5'- aGGCGGGaCCCCCGcGCCGuguccccCGuGUCc -3'
miRNA:   3'- gCCGCCCcGGGGGC-UGGCuu-----GC-CAGa -5'
5263 5' -64.6 NC_001798.1 + 150620 0.67 0.501798
Target:  5'- uGG-GGGGCUCCUgGGCCGcGCGGggCUg -3'
miRNA:   3'- gCCgCCCCGGGGG-CUGGCuUGCCa-GA- -5'
5263 5' -64.6 NC_001798.1 + 150138 0.67 0.508118
Target:  5'- -cGCGGGGCCCgaguCCGACCcgcgccucuuccggGGGCGGg-- -3'
miRNA:   3'- gcCGCCCCGGG----GGCUGG--------------CUUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 150005 0.69 0.407735
Target:  5'- gGGCGaGcGGCCCgUGGCC--GCGGUCg -3'
miRNA:   3'- gCCGC-C-CCGGGgGCUGGcuUGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 147240 0.71 0.286113
Target:  5'- gGGCcccGGGGCCCCgGGCCGcgccGGCGG-Cg -3'
miRNA:   3'- gCCG---CCCCGGGGgCUGGC----UUGCCaGa -5'
5263 5' -64.6 NC_001798.1 + 147205 0.74 0.204196
Target:  5'- cCGGCGguccggcccGGGCCCCCGGCgGAgcGCGGg-- -3'
miRNA:   3'- -GCCGC---------CCCGGGGGCUGgCU--UGCCaga -5'
5263 5' -64.6 NC_001798.1 + 147152 0.68 0.455159
Target:  5'- cCGGcCGGGGgUCCCGgguagccgcccggcGCCGGGCGGa-- -3'
miRNA:   3'- -GCC-GCCCCgGGGGC--------------UGGCUUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 147055 0.72 0.262004
Target:  5'- cCGGCcggaGGGGCCCCCGcACCucGGCGGcCg -3'
miRNA:   3'- -GCCG----CCCCGGGGGC-UGGc-UUGCCaGa -5'
5263 5' -64.6 NC_001798.1 + 142720 0.66 0.556951
Target:  5'- gCGGCGacGGCaCCgCCGGgcgaaCGAACGGUCa -3'
miRNA:   3'- -GCCGCc-CCG-GG-GGCUg----GCUUGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 140216 0.66 0.575745
Target:  5'- uGcGUGGGGUCgCCGACCcaGACGGcCUc -3'
miRNA:   3'- gC-CGCCCCGGgGGCUGGc-UUGCCaGA- -5'
5263 5' -64.6 NC_001798.1 + 137923 0.69 0.399739
Target:  5'- gGGCGGcccgcgccuCCCCCGGCCGccCGGUCc -3'
miRNA:   3'- gCCGCCcc-------GGGGGCUGGCuuGCCAGa -5'
5263 5' -64.6 NC_001798.1 + 132160 0.7 0.325499
Target:  5'- gGGCGGGGCgCCCCccCCGGACGc--- -3'
miRNA:   3'- gCCGCCCCG-GGGGcuGGCUUGCcaga -5'
5263 5' -64.6 NC_001798.1 + 129365 0.73 0.223821
Target:  5'- uGGCGGGGCCCCCGGacCCGccaaGG-Ca -3'
miRNA:   3'- gCCGCCCCGGGGGCU--GGCuug-CCaGa -5'
5263 5' -64.6 NC_001798.1 + 128412 0.73 0.21877
Target:  5'- uCGGCGGGGCCUgaCGACCGccuccacgcuGCGGUg- -3'
miRNA:   3'- -GCCGCCCCGGGg-GCUGGCu---------UGCCAga -5'
5263 5' -64.6 NC_001798.1 + 127937 0.7 0.346654
Target:  5'- aCGGCGGGGCCCCgGG-CGAAaaggccCGGcCc -3'
miRNA:   3'- -GCCGCCCCGGGGgCUgGCUU------GCCaGa -5'
5263 5' -64.6 NC_001798.1 + 122131 0.73 0.213816
Target:  5'- cCGGgGGGGCCCCCGgGCC--GCGGg-- -3'
miRNA:   3'- -GCCgCCCCGGGGGC-UGGcuUGCCaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.