miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5263 5' -64.6 NC_001798.1 + 53065 1.06 0.000959
Target:  5'- cCGGCGGGGCCCCCGACCGAACGGUCUc -3'
miRNA:   3'- -GCCGCCCCGGGGGCUGGCUUGCCAGA- -5'
5263 5' -64.6 NC_001798.1 + 36398 0.77 0.121102
Target:  5'- gCGGCgccGGGGCCCCCcuGCCGGGCGGg-- -3'
miRNA:   3'- -GCCG---CCCCGGGGGc-UGGCUUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 109697 0.76 0.154064
Target:  5'- uGGCGGGcgcGCCCUCGGCCGAgcaGCGGg-- -3'
miRNA:   3'- gCCGCCC---CGGGGGCUGGCU---UGCCaga -5'
5263 5' -64.6 NC_001798.1 + 30435 0.75 0.169397
Target:  5'- cCGGCccGGCCCCCGGCCGAGCGc--- -3'
miRNA:   3'- -GCCGccCCGGGGGCUGGCUUGCcaga -5'
5263 5' -64.6 NC_001798.1 + 38434 0.74 0.181778
Target:  5'- gGGcCGGGGCCCCacauuuauCCGGugGGUCa -3'
miRNA:   3'- gCC-GCCCCGGGGgcu-----GGCUugCCAGa -5'
5263 5' -64.6 NC_001798.1 + 152062 0.74 0.199529
Target:  5'- aCGGCccacgGGGGuCCCCCGACCGcuuaAGCGGg-- -3'
miRNA:   3'- -GCCG-----CCCC-GGGGGCUGGC----UUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 154127 0.74 0.204196
Target:  5'- gCGGCGGGGaCCCCGGCggcgggacauggCGGGCGG-CUg -3'
miRNA:   3'- -GCCGCCCCgGGGGCUG------------GCUUGCCaGA- -5'
5263 5' -64.6 NC_001798.1 + 147205 0.74 0.204196
Target:  5'- cCGGCGguccggcccGGGCCCCCGGCgGAgcGCGGg-- -3'
miRNA:   3'- -GCCGC---------CCCGGGGGCUGgCU--UGCCaga -5'
5263 5' -64.6 NC_001798.1 + 2469 0.73 0.208958
Target:  5'- gGGuCGGGGCCCUCGGCgGGccgGCgGGUCa -3'
miRNA:   3'- gCC-GCCCCGGGGGCUGgCU---UG-CCAGa -5'
5263 5' -64.6 NC_001798.1 + 122131 0.73 0.213816
Target:  5'- cCGGgGGGGCCCCCGgGCC--GCGGg-- -3'
miRNA:   3'- -GCCgCCCCGGGGGC-UGGcuUGCCaga -5'
5263 5' -64.6 NC_001798.1 + 128412 0.73 0.21877
Target:  5'- uCGGCGGGGCCUgaCGACCGccuccacgcuGCGGUg- -3'
miRNA:   3'- -GCCGCCCCGGGg-GCUGGCu---------UGCCAga -5'
5263 5' -64.6 NC_001798.1 + 129365 0.73 0.223821
Target:  5'- uGGCGGGGCCCCCGGacCCGccaaGG-Ca -3'
miRNA:   3'- gCCGCCCCGGGGGCU--GGCuug-CCaGa -5'
5263 5' -64.6 NC_001798.1 + 96170 0.73 0.234222
Target:  5'- uGGCGGccgcGCCCCCGGCC--GCGGUUUc -3'
miRNA:   3'- gCCGCCc---CGGGGGCUGGcuUGCCAGA- -5'
5263 5' -64.6 NC_001798.1 + 28875 0.72 0.256241
Target:  5'- cCGGCGGaGCCCCgGAgcuCCGAA-GGUCUg -3'
miRNA:   3'- -GCCGCCcCGGGGgCU---GGCUUgCCAGA- -5'
5263 5' -64.6 NC_001798.1 + 147055 0.72 0.262004
Target:  5'- cCGGCcggaGGGGCCCCCGcACCucGGCGGcCg -3'
miRNA:   3'- -GCCG----CCCCGGGGGC-UGGc-UUGCCaGa -5'
5263 5' -64.6 NC_001798.1 + 121795 0.71 0.279926
Target:  5'- gGGCGGGGCCgggCCGGCCGuuguCGG-Ca -3'
miRNA:   3'- gCCGCCCCGGg--GGCUGGCuu--GCCaGa -5'
5263 5' -64.6 NC_001798.1 + 55010 0.71 0.286113
Target:  5'- cCGGCGGGGCCgCCCuGCCGGGagacgcccCGGaCUc -3'
miRNA:   3'- -GCCGCCCCGG-GGGcUGGCUU--------GCCaGA- -5'
5263 5' -64.6 NC_001798.1 + 147240 0.71 0.286113
Target:  5'- gGGCcccGGGGCCCCgGGCCGcgccGGCGG-Cg -3'
miRNA:   3'- gCCG---CCCCGGGGgCUGGC----UUGCCaGa -5'
5263 5' -64.6 NC_001798.1 + 3993 0.71 0.286113
Target:  5'- cCGcCGGGGCCgCCCGGCCGugaAGCGGcCc -3'
miRNA:   3'- -GCcGCCCCGG-GGGCUGGC---UUGCCaGa -5'
5263 5' -64.6 NC_001798.1 + 114490 0.71 0.292407
Target:  5'- aCGGgGGaGGCCCUgGACgGGACGGg-- -3'
miRNA:   3'- -GCCgCC-CCGGGGgCUGgCUUGCCaga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.