miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5267 3' -54.4 NC_001798.1 + 50900 1.05 0.005978
Target:  5'- uAAAAAAUCGGGCCUCCGGCCACCAUGu -3'
miRNA:   3'- -UUUUUUAGCCCGGAGGCCGGUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 109037 0.77 0.400468
Target:  5'- ------cCGGGCCUCCGGCCGgccCCAg- -3'
miRNA:   3'- uuuuuuaGCCCGGAGGCCGGU---GGUac -5'
5267 3' -54.4 NC_001798.1 + 61853 0.75 0.513368
Target:  5'- gGGGAAcgCGGGCCgCCGGCCcaGCCcgGc -3'
miRNA:   3'- -UUUUUuaGCCCGGaGGCCGG--UGGuaC- -5'
5267 3' -54.4 NC_001798.1 + 93311 0.73 0.595343
Target:  5'- ------gCGGGCCUCgUGGgCGCCAUGg -3'
miRNA:   3'- uuuuuuaGCCCGGAG-GCCgGUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 35291 0.72 0.679036
Target:  5'- -----cUCGGGCuCUCCGGCgGCUuaAUGg -3'
miRNA:   3'- uuuuuuAGCCCG-GAGGCCGgUGG--UAC- -5'
5267 3' -54.4 NC_001798.1 + 130449 0.71 0.730314
Target:  5'- ----cGUCuGGGCCcCCGGCCACUg-- -3'
miRNA:   3'- uuuuuUAG-CCCGGaGGCCGGUGGuac -5'
5267 3' -54.4 NC_001798.1 + 91623 0.7 0.740341
Target:  5'- ------aUGGGCggCCGGCCGCCcgGg -3'
miRNA:   3'- uuuuuuaGCCCGgaGGCCGGUGGuaC- -5'
5267 3' -54.4 NC_001798.1 + 64101 0.7 0.760089
Target:  5'- -cGGAAUCGGgGCCgccCCGGCCcCCGa- -3'
miRNA:   3'- uuUUUUAGCC-CGGa--GGCCGGuGGUac -5'
5267 3' -54.4 NC_001798.1 + 87193 0.7 0.769789
Target:  5'- ------aCGGGCggCUGGCCACCGUc -3'
miRNA:   3'- uuuuuuaGCCCGgaGGCCGGUGGUAc -5'
5267 3' -54.4 NC_001798.1 + 153435 0.7 0.773634
Target:  5'- ----cGUCGGGCCaggcgcgcggccgucUCCcaGGCCACCAg- -3'
miRNA:   3'- uuuuuUAGCCCGG---------------AGG--CCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 153334 0.69 0.798079
Target:  5'- -----cUCGGGCCUCgGGCU-CCAg- -3'
miRNA:   3'- uuuuuuAGCCCGGAGgCCGGuGGUac -5'
5267 3' -54.4 NC_001798.1 + 138745 0.69 0.807207
Target:  5'- ------cCGcGGCC-CCGGCgACCGUGg -3'
miRNA:   3'- uuuuuuaGC-CCGGaGGCCGgUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 69847 0.69 0.816168
Target:  5'- ------cCGGGCCgccgUCGGCCGCCc-- -3'
miRNA:   3'- uuuuuuaGCCCGGa---GGCCGGUGGuac -5'
5267 3' -54.4 NC_001798.1 + 56783 0.69 0.824953
Target:  5'- -------gGGGCC-CUGGCCGCCGa- -3'
miRNA:   3'- uuuuuuagCCCGGaGGCCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 134366 0.68 0.841964
Target:  5'- ----cGUgGGGCCcgCCGGCCGCUc-- -3'
miRNA:   3'- uuuuuUAgCCCGGa-GGCCGGUGGuac -5'
5267 3' -54.4 NC_001798.1 + 2180 0.68 0.841964
Target:  5'- --cGGGUCGGGCaccuggcgcaUCCaGGCCGCCGc- -3'
miRNA:   3'- uuuUUUAGCCCGg---------AGG-CCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 59923 0.68 0.850174
Target:  5'- cGAGGAAccCGGG-CUCCGGCCgaGCCAg- -3'
miRNA:   3'- -UUUUUUa-GCCCgGAGGCCGG--UGGUac -5'
5267 3' -54.4 NC_001798.1 + 1468 0.68 0.850174
Target:  5'- cAGAAGUCcGGCgCgCCGGgCGCCAUGg -3'
miRNA:   3'- uUUUUUAGcCCG-GaGGCCgGUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 86321 0.68 0.850174
Target:  5'- ------gCGGGCCUaCUGGCUGgCCAUGc -3'
miRNA:   3'- uuuuuuaGCCCGGA-GGCCGGU-GGUAC- -5'
5267 3' -54.4 NC_001798.1 + 96719 0.68 0.850174
Target:  5'- -uGGGGUCGGGCCUCauCGuGCC-CCcgGa -3'
miRNA:   3'- uuUUUUAGCCCGGAG--GC-CGGuGGuaC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.