miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5267 3' -54.4 NC_001798.1 + 1468 0.68 0.850174
Target:  5'- cAGAAGUCcGGCgCgCCGGgCGCCAUGg -3'
miRNA:   3'- uUUUUUAGcCCG-GaGGCCgGUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 2180 0.68 0.841964
Target:  5'- --cGGGUCGGGCaccuggcgcaUCCaGGCCGCCGc- -3'
miRNA:   3'- uuuUUUAGCCCGg---------AGG-CCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 2823 0.67 0.894846
Target:  5'- -------aGGGCC-CCGGCgACCAg- -3'
miRNA:   3'- uuuuuuagCCCGGaGGCCGgUGGUac -5'
5267 3' -54.4 NC_001798.1 + 3023 0.67 0.907861
Target:  5'- ------gCGGGCCgggcUCCGGCCAgCCccGg -3'
miRNA:   3'- uuuuuuaGCCCGG----AGGCCGGU-GGuaC- -5'
5267 3' -54.4 NC_001798.1 + 4790 0.67 0.914599
Target:  5'- ----cGUCGGccucgucuucguucuCCUCCGGCCcACCGUGc -3'
miRNA:   3'- uuuuuUAGCCc--------------GGAGGCCGG-UGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 9417 0.67 0.887976
Target:  5'- gGGAGAGUCGGGUCUCUccggagGGUCcuGCCAc- -3'
miRNA:   3'- -UUUUUUAGCCCGGAGG------CCGG--UGGUac -5'
5267 3' -54.4 NC_001798.1 + 24187 0.67 0.913999
Target:  5'- -----cUgGGGCCUggcgcacguggCGGCCGCCGUGg -3'
miRNA:   3'- uuuuuuAgCCCGGAg----------GCCGGUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 25691 0.66 0.925527
Target:  5'- ------gCGGGCCcgccaCGGCCGCC-UGg -3'
miRNA:   3'- uuuuuuaGCCCGGag---GCCGGUGGuAC- -5'
5267 3' -54.4 NC_001798.1 + 25997 0.68 0.873529
Target:  5'- ------gCuGGCCUCCGGCCG-CGUGu -3'
miRNA:   3'- uuuuuuaGcCCGGAGGCCGGUgGUAC- -5'
5267 3' -54.4 NC_001798.1 + 31669 0.67 0.913999
Target:  5'- ------cCGGGCCcgcgCCGcCCGCCGUGc -3'
miRNA:   3'- uuuuuuaGCCCGGa---GGCcGGUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 35291 0.72 0.679036
Target:  5'- -----cUCGGGCuCUCCGGCgGCUuaAUGg -3'
miRNA:   3'- uuuuuuAGCCCG-GAGGCCGgUGG--UAC- -5'
5267 3' -54.4 NC_001798.1 + 37319 0.67 0.887276
Target:  5'- ----cGUCGGGCCUCCcuacuuacgcagaGGCgACCu-- -3'
miRNA:   3'- uuuuuUAGCCCGGAGG-------------CCGgUGGuac -5'
5267 3' -54.4 NC_001798.1 + 48160 0.66 0.940939
Target:  5'- ---cGGUCGGGCgC-CUGGCgGCCAc- -3'
miRNA:   3'- uuuuUUAGCCCG-GaGGCCGgUGGUac -5'
5267 3' -54.4 NC_001798.1 + 50900 1.05 0.005978
Target:  5'- uAAAAAAUCGGGCCUCCGGCCACCAUGu -3'
miRNA:   3'- -UUUUUUAGCCCGGAGGCCGGUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 54365 0.68 0.873529
Target:  5'- -----cUCGcGGCgUCCGGCCcACCGg- -3'
miRNA:   3'- uuuuuuAGC-CCGgAGGCCGG-UGGUac -5'
5267 3' -54.4 NC_001798.1 + 56783 0.69 0.824953
Target:  5'- -------gGGGCC-CUGGCCGCCGa- -3'
miRNA:   3'- uuuuuuagCCCGGaGGCCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 58471 0.67 0.907861
Target:  5'- -----uUCGGGCCgUgCGGCC-CCGUc -3'
miRNA:   3'- uuuuuuAGCCCGG-AgGCCGGuGGUAc -5'
5267 3' -54.4 NC_001798.1 + 59923 0.68 0.850174
Target:  5'- cGAGGAAccCGGG-CUCCGGCCgaGCCAg- -3'
miRNA:   3'- -UUUUUUa-GCCCgGAGGCCGG--UGGUac -5'
5267 3' -54.4 NC_001798.1 + 61466 0.67 0.901476
Target:  5'- -------gGGGCCUCCGgGCC-CCGg- -3'
miRNA:   3'- uuuuuuagCCCGGAGGC-CGGuGGUac -5'
5267 3' -54.4 NC_001798.1 + 61853 0.75 0.513368
Target:  5'- gGGGAAcgCGGGCCgCCGGCCcaGCCcgGc -3'
miRNA:   3'- -UUUUUuaGCCCGGaGGCCGG--UGGuaC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.