miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5267 3' -54.4 NC_001798.1 + 153840 0.67 0.913999
Target:  5'- -------gGGGCCUCCGG-CGCCu-- -3'
miRNA:   3'- uuuuuuagCCCGGAGGCCgGUGGuac -5'
5267 3' -54.4 NC_001798.1 + 153435 0.7 0.773634
Target:  5'- ----cGUCGGGCCaggcgcgcggccgucUCCcaGGCCACCAg- -3'
miRNA:   3'- uuuuuUAGCCCGG---------------AGG--CCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 153334 0.69 0.798079
Target:  5'- -----cUCGGGCCUCgGGCU-CCAg- -3'
miRNA:   3'- uuuuuuAGCCCGGAGgCCGGuGGUac -5'
5267 3' -54.4 NC_001798.1 + 152364 0.67 0.907861
Target:  5'- ------cCGGGUCUCCuccucccgccgGGCCGCCGc- -3'
miRNA:   3'- uuuuuuaGCCCGGAGG-----------CCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 148076 0.67 0.894846
Target:  5'- gAAGGAAaCGGGCCgggggCCggGGCCGCUAg- -3'
miRNA:   3'- -UUUUUUaGCCCGGa----GG--CCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 146642 0.67 0.901476
Target:  5'- ------gCGGGCaUCCGGCgGCCGg- -3'
miRNA:   3'- uuuuuuaGCCCGgAGGCCGgUGGUac -5'
5267 3' -54.4 NC_001798.1 + 138745 0.69 0.807207
Target:  5'- ------cCGcGGCC-CCGGCgACCGUGg -3'
miRNA:   3'- uuuuuuaGC-CCGGaGGCCGgUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 134366 0.68 0.841964
Target:  5'- ----cGUgGGGCCcgCCGGCCGCUc-- -3'
miRNA:   3'- uuuuuUAgCCCGGa-GGCCGGUGGuac -5'
5267 3' -54.4 NC_001798.1 + 130449 0.71 0.730314
Target:  5'- ----cGUCuGGGCCcCCGGCCACUg-- -3'
miRNA:   3'- uuuuuUAG-CCCGGaGGCCGGUGGuac -5'
5267 3' -54.4 NC_001798.1 + 130241 0.68 0.858175
Target:  5'- ------cCGGGUCUCCGGgcggcCCGCCAc- -3'
miRNA:   3'- uuuuuuaGCCCGGAGGCC-----GGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 125861 0.66 0.925527
Target:  5'- ----uGUUGGcGCCUUuaUGGCCGCCAa- -3'
miRNA:   3'- uuuuuUAGCC-CGGAG--GCCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 121992 0.66 0.940939
Target:  5'- ------aCGcGGCCUCCGGCguCGCCu-- -3'
miRNA:   3'- uuuuuuaGC-CCGGAGGCCG--GUGGuac -5'
5267 3' -54.4 NC_001798.1 + 120683 0.66 0.940939
Target:  5'- gAAGGAGUCGGGCagaaacagaUCGGCCGuCCGg- -3'
miRNA:   3'- -UUUUUUAGCCCGga-------GGCCGGU-GGUac -5'
5267 3' -54.4 NC_001798.1 + 120208 0.67 0.894846
Target:  5'- aGAGGAGcUCGGGCC-CCGGgccguuggcccCCGCCGa- -3'
miRNA:   3'- -UUUUUU-AGCCCGGaGGCC-----------GGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 115529 0.66 0.940939
Target:  5'- ----cGUCGcGGCC-CCGGCCgGCCccGg -3'
miRNA:   3'- uuuuuUAGC-CCGGaGGCCGG-UGGuaC- -5'
5267 3' -54.4 NC_001798.1 + 109037 0.77 0.400468
Target:  5'- ------cCGGGCCUCCGGCCGgccCCAg- -3'
miRNA:   3'- uuuuuuaGCCCGGAGGCCGGU---GGUac -5'
5267 3' -54.4 NC_001798.1 + 104671 0.67 0.907861
Target:  5'- -----cUCGuagcGGCCgCCGGCCGCCGc- -3'
miRNA:   3'- uuuuuuAGC----CCGGaGGCCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 102352 0.67 0.913999
Target:  5'- ------cCGuGGUCUCCGGCgGCCGc- -3'
miRNA:   3'- uuuuuuaGC-CCGGAGGCCGgUGGUac -5'
5267 3' -54.4 NC_001798.1 + 102046 0.66 0.919888
Target:  5'- -------gGGGUCUCCGuGUCugCGUGg -3'
miRNA:   3'- uuuuuuagCCCGGAGGC-CGGugGUAC- -5'
5267 3' -54.4 NC_001798.1 + 98660 0.66 0.940939
Target:  5'- cGGGGGUCccGCCUcCCGGCCGCCc-- -3'
miRNA:   3'- uUUUUUAGccCGGA-GGCCGGUGGuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.