miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5267 3' -54.4 NC_001798.1 + 64101 0.7 0.760089
Target:  5'- -cGGAAUCGGgGCCgccCCGGCCcCCGa- -3'
miRNA:   3'- uuUUUUAGCC-CGGa--GGCCGGuGGUac -5'
5267 3' -54.4 NC_001798.1 + 65724 0.67 0.907861
Target:  5'- cAGGGAGUCGaGGaCCUUCagGGCCGgCAUGa -3'
miRNA:   3'- -UUUUUUAGC-CC-GGAGG--CCGGUgGUAC- -5'
5267 3' -54.4 NC_001798.1 + 69847 0.69 0.816168
Target:  5'- ------cCGGGCCgccgUCGGCCGCCc-- -3'
miRNA:   3'- uuuuuuaGCCCGGa---GGCCGGUGGuac -5'
5267 3' -54.4 NC_001798.1 + 72111 0.67 0.910346
Target:  5'- -cAAAAUUGGGCgcgcugaucacccucCUcgaaCCGGCCACCcgGg -3'
miRNA:   3'- uuUUUUAGCCCG---------------GA----GGCCGGUGGuaC- -5'
5267 3' -54.4 NC_001798.1 + 72701 0.68 0.865962
Target:  5'- cGGGAAAUccaCGGGUUcCUGGCCAUCGUGu -3'
miRNA:   3'- -UUUUUUA---GCCCGGaGGCCGGUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 80616 0.66 0.925527
Target:  5'- ------aCGuGGCCgugCUGGCCGCCGc- -3'
miRNA:   3'- uuuuuuaGC-CCGGa--GGCCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 80838 0.66 0.930915
Target:  5'- uGAGAcgUGGGCCgUCGGCCuccuCCAc- -3'
miRNA:   3'- uUUUUuaGCCCGGaGGCCGGu---GGUac -5'
5267 3' -54.4 NC_001798.1 + 86082 0.68 0.858175
Target:  5'- uGGGAGUCgGGGCC-CCGGCUgcgcGCCGc- -3'
miRNA:   3'- uUUUUUAG-CCCGGaGGCCGG----UGGUac -5'
5267 3' -54.4 NC_001798.1 + 86232 0.67 0.894846
Target:  5'- ------cUGGGCCcgCUgauGGCCACCGUGc -3'
miRNA:   3'- uuuuuuaGCCCGGa-GG---CCGGUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 86321 0.68 0.850174
Target:  5'- ------gCGGGCCUaCUGGCUGgCCAUGc -3'
miRNA:   3'- uuuuuuaGCCCGGA-GGCCGGU-GGUAC- -5'
5267 3' -54.4 NC_001798.1 + 87193 0.7 0.769789
Target:  5'- ------aCGGGCggCUGGCCACCGUc -3'
miRNA:   3'- uuuuuuaGCCCGgaGGCCGGUGGUAc -5'
5267 3' -54.4 NC_001798.1 + 91623 0.7 0.740341
Target:  5'- ------aUGGGCggCCGGCCGCCcgGg -3'
miRNA:   3'- uuuuuuaGCCCGgaGGCCGGUGGuaC- -5'
5267 3' -54.4 NC_001798.1 + 92938 0.68 0.858175
Target:  5'- ----cGUCGGGCCc---GCCGCCGUGg -3'
miRNA:   3'- uuuuuUAGCCCGGaggcCGGUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 93311 0.73 0.595343
Target:  5'- ------gCGGGCCUCgUGGgCGCCAUGg -3'
miRNA:   3'- uuuuuuaGCCCGGAG-GCCgGUGGUAC- -5'
5267 3' -54.4 NC_001798.1 + 96719 0.68 0.850174
Target:  5'- -uGGGGUCGGGCCUCauCGuGCC-CCcgGa -3'
miRNA:   3'- uuUUUUAGCCCGGAG--GC-CGGuGGuaC- -5'
5267 3' -54.4 NC_001798.1 + 98660 0.66 0.940939
Target:  5'- cGGGGGUCccGCCUcCCGGCCGCCc-- -3'
miRNA:   3'- uUUUUUAGccCGGA-GGCCGGUGGuac -5'
5267 3' -54.4 NC_001798.1 + 102046 0.66 0.919888
Target:  5'- -------gGGGUCUCCGuGUCugCGUGg -3'
miRNA:   3'- uuuuuuagCCCGGAGGC-CGGugGUAC- -5'
5267 3' -54.4 NC_001798.1 + 102352 0.67 0.913999
Target:  5'- ------cCGuGGUCUCCGGCgGCCGc- -3'
miRNA:   3'- uuuuuuaGC-CCGGAGGCCGgUGGUac -5'
5267 3' -54.4 NC_001798.1 + 104671 0.67 0.907861
Target:  5'- -----cUCGuagcGGCCgCCGGCCGCCGc- -3'
miRNA:   3'- uuuuuuAGC----CCGGaGGCCGGUGGUac -5'
5267 3' -54.4 NC_001798.1 + 109037 0.77 0.400468
Target:  5'- ------cCGGGCCUCCGGCCGgccCCAg- -3'
miRNA:   3'- uuuuuuaGCCCGGAGGCCGGU---GGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.