Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5267 | 3' | -54.4 | NC_001798.1 | + | 65724 | 0.67 | 0.907861 |
Target: 5'- cAGGGAGUCGaGGaCCUUCagGGCCGgCAUGa -3' miRNA: 3'- -UUUUUUAGC-CC-GGAGG--CCGGUgGUAC- -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 4790 | 0.67 | 0.914599 |
Target: 5'- ----cGUCGGccucgucuucguucuCCUCCGGCCcACCGUGc -3' miRNA: 3'- uuuuuUAGCCc--------------GGAGGCCGG-UGGUAC- -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 102352 | 0.67 | 0.913999 |
Target: 5'- ------cCGuGGUCUCCGGCgGCCGc- -3' miRNA: 3'- uuuuuuaGC-CCGGAGGCCGgUGGUac -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 31669 | 0.67 | 0.913999 |
Target: 5'- ------cCGGGCCcgcgCCGcCCGCCGUGc -3' miRNA: 3'- uuuuuuaGCCCGGa---GGCcGGUGGUAC- -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 153840 | 0.67 | 0.913999 |
Target: 5'- -------gGGGCCUCCGG-CGCCu-- -3' miRNA: 3'- uuuuuuagCCCGGAGGCCgGUGGuac -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 24187 | 0.67 | 0.913999 |
Target: 5'- -----cUgGGGCCUggcgcacguggCGGCCGCCGUGg -3' miRNA: 3'- uuuuuuAgCCCGGAg----------GCCGGUGGUAC- -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 72111 | 0.67 | 0.910346 |
Target: 5'- -cAAAAUUGGGCgcgcugaucacccucCUcgaaCCGGCCACCcgGg -3' miRNA: 3'- uuUUUUAGCCCG---------------GA----GGCCGGUGGuaC- -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 152364 | 0.67 | 0.907861 |
Target: 5'- ------cCGGGUCUCCuccucccgccgGGCCGCCGc- -3' miRNA: 3'- uuuuuuaGCCCGGAGG-----------CCGGUGGUac -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 104671 | 0.67 | 0.907861 |
Target: 5'- -----cUCGuagcGGCCgCCGGCCGCCGc- -3' miRNA: 3'- uuuuuuAGC----CCGGaGGCCGGUGGUac -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 134366 | 0.68 | 0.841964 |
Target: 5'- ----cGUgGGGCCcgCCGGCCGCUc-- -3' miRNA: 3'- uuuuuUAgCCCGGa-GGCCGGUGGuac -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 96719 | 0.68 | 0.850174 |
Target: 5'- -uGGGGUCGGGCCUCauCGuGCC-CCcgGa -3' miRNA: 3'- uuUUUUAGCCCGGAG--GC-CGGuGGuaC- -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 86321 | 0.68 | 0.850174 |
Target: 5'- ------gCGGGCCUaCUGGCUGgCCAUGc -3' miRNA: 3'- uuuuuuaGCCCGGA-GGCCGGU-GGUAC- -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 1468 | 0.68 | 0.850174 |
Target: 5'- cAGAAGUCcGGCgCgCCGGgCGCCAUGg -3' miRNA: 3'- uUUUUUAGcCCG-GaGGCCgGUGGUAC- -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 59923 | 0.68 | 0.850174 |
Target: 5'- cGAGGAAccCGGG-CUCCGGCCgaGCCAg- -3' miRNA: 3'- -UUUUUUa-GCCCgGAGGCCGG--UGGUac -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 86082 | 0.68 | 0.858175 |
Target: 5'- uGGGAGUCgGGGCC-CCGGCUgcgcGCCGc- -3' miRNA: 3'- uUUUUUAG-CCCGGaGGCCGG----UGGUac -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 92938 | 0.68 | 0.858175 |
Target: 5'- ----cGUCGGGCCc---GCCGCCGUGg -3' miRNA: 3'- uuuuuUAGCCCGGaggcCGGUGGUAC- -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 130241 | 0.68 | 0.858175 |
Target: 5'- ------cCGGGUCUCCGGgcggcCCGCCAc- -3' miRNA: 3'- uuuuuuaGCCCGGAGGCC-----GGUGGUac -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 72701 | 0.68 | 0.865962 |
Target: 5'- cGGGAAAUccaCGGGUUcCUGGCCAUCGUGu -3' miRNA: 3'- -UUUUUUA---GCCCGGaGGCCGGUGGUAC- -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 25997 | 0.68 | 0.873529 |
Target: 5'- ------gCuGGCCUCCGGCCG-CGUGu -3' miRNA: 3'- uuuuuuaGcCCGGAGGCCGGUgGUAC- -5' |
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5267 | 3' | -54.4 | NC_001798.1 | + | 2180 | 0.68 | 0.841964 |
Target: 5'- --cGGGUCGGGCaccuggcgcaUCCaGGCCGCCGc- -3' miRNA: 3'- uuuUUUAGCCCGg---------AGG-CCGGUGGUac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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