miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5273 5' -59 NC_001798.1 + 47770 1.08 0.002242
Target:  5'- gACGACGAGUCCCGGGAUACCGCGCGAc -3'
miRNA:   3'- -UGCUGCUCAGGGCCCUAUGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 46670 0.77 0.270671
Target:  5'- cACGugGGG-CCCGGGGccggaUACCGCGgGGg -3'
miRNA:   3'- -UGCugCUCaGGGCCCU-----AUGGCGCgCU- -5'
5273 5' -59 NC_001798.1 + 86129 0.75 0.331032
Target:  5'- cGCGgucaGCGAGUCCUGGGAagcgcACCGCGgGGc -3'
miRNA:   3'- -UGC----UGCUCAGGGCCCUa----UGGCGCgCU- -5'
5273 5' -59 NC_001798.1 + 9092 0.75 0.35324
Target:  5'- gGCGugGAGggCCaCGGGAaagGCCGCGgGGg -3'
miRNA:   3'- -UGCugCUCa-GG-GCCCUa--UGGCGCgCU- -5'
5273 5' -59 NC_001798.1 + 23544 0.74 0.384456
Target:  5'- gACGACGAGgaggCgGGGGUGCC-CGCGAg -3'
miRNA:   3'- -UGCUGCUCag--GgCCCUAUGGcGCGCU- -5'
5273 5' -59 NC_001798.1 + 20510 0.73 0.452103
Target:  5'- cUGGcCGGGgCCUGGGGUugcGCCGCGCGGa -3'
miRNA:   3'- uGCU-GCUCaGGGCCCUA---UGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 30759 0.72 0.461011
Target:  5'- cGCGugGAGg-CCGaGGcgGCCGUGCGGg -3'
miRNA:   3'- -UGCugCUCagGGC-CCuaUGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 77191 0.72 0.488274
Target:  5'- cGCGACGgcaAGUCCCGcggcgacgguGGAcgcgGCCGUGCGGg -3'
miRNA:   3'- -UGCUGC---UCAGGGC----------CCUa---UGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 45916 0.72 0.49753
Target:  5'- uCGGCGGGUCUCGGGGggugGCgGuCGCGu -3'
miRNA:   3'- uGCUGCUCAGGGCCCUa---UGgC-GCGCu -5'
5273 5' -59 NC_001798.1 + 81655 0.72 0.506864
Target:  5'- ---cCGAGUCCCcccgcGGAUGCCGCGCu- -3'
miRNA:   3'- ugcuGCUCAGGGc----CCUAUGGCGCGcu -5'
5273 5' -59 NC_001798.1 + 47573 0.72 0.506864
Target:  5'- -aGuCGuGUCCgCGGGAagcGCCGCGCGGg -3'
miRNA:   3'- ugCuGCuCAGG-GCCCUa--UGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 79531 0.71 0.515327
Target:  5'- cCGGCgGAGaCCCGGGGccccuggUGCUGCGUGAg -3'
miRNA:   3'- uGCUG-CUCaGGGCCCU-------AUGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 95312 0.71 0.532421
Target:  5'- gGCGuCGAGUCUCGGGGgcgggGCCcacgagcauucgcuGUGCGAg -3'
miRNA:   3'- -UGCuGCUCAGGGCCCUa----UGG--------------CGCGCU- -5'
5273 5' -59 NC_001798.1 + 26352 0.71 0.53529
Target:  5'- cGCGGCG-G-CCCGGcGGaGCUGCGCGGg -3'
miRNA:   3'- -UGCUGCuCaGGGCC-CUaUGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 85026 0.71 0.548749
Target:  5'- gGCGACGuccGcCCCgGGGGUGCCgucgagcgccgccguGCGCGAa -3'
miRNA:   3'- -UGCUGCu--CaGGG-CCCUAUGG---------------CGCGCU- -5'
5273 5' -59 NC_001798.1 + 78552 0.7 0.583797
Target:  5'- cAUGGCGGGcCUgCGGGAggcgcugGCCGCGCGc -3'
miRNA:   3'- -UGCUGCUCaGG-GCCCUa------UGGCGCGCu -5'
5273 5' -59 NC_001798.1 + 28657 0.7 0.583797
Target:  5'- cGCGACcGGUUCCGGc--GCCGCGUGGc -3'
miRNA:   3'- -UGCUGcUCAGGGCCcuaUGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 26421 0.7 0.583797
Target:  5'- gGCGACGcGccCCCGcuGGUGCUGCGCGAc -3'
miRNA:   3'- -UGCUGCuCa-GGGCc-CUAUGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 27492 0.7 0.59362
Target:  5'- -gGGCGGG-CgCGGGAaaaaaGCCGCGCGGg -3'
miRNA:   3'- ugCUGCUCaGgGCCCUa----UGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 79307 0.7 0.603468
Target:  5'- -gGAgGAGUUCCGGGG---CGCGCGGg -3'
miRNA:   3'- ugCUgCUCAGGGCCCUaugGCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.