miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5273 5' -59 NC_001798.1 + 2489 0.66 0.83656
Target:  5'- cCGGCGGGUCagcgccgCGGGGcgcggcgGCCGCgGCGGc -3'
miRNA:   3'- uGCUGCUCAGg------GCCCUa------UGGCG-CGCU- -5'
5273 5' -59 NC_001798.1 + 9092 0.75 0.35324
Target:  5'- gGCGugGAGggCCaCGGGAaagGCCGCGgGGg -3'
miRNA:   3'- -UGCugCUCa-GG-GCCCUa--UGGCGCgCU- -5'
5273 5' -59 NC_001798.1 + 15044 0.68 0.701883
Target:  5'- aGCGugGGGcggaugggCCCGGGG---CGCGCGGg -3'
miRNA:   3'- -UGCugCUCa-------GGGCCCUaugGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 17653 0.66 0.803415
Target:  5'- aACGACGugcaGGUCCaggaGGGGUaggAUCGCGgGGu -3'
miRNA:   3'- -UGCUGC----UCAGGg---CCCUA---UGGCGCgCU- -5'
5273 5' -59 NC_001798.1 + 20510 0.73 0.452103
Target:  5'- cUGGcCGGGgCCUGGGGUugcGCCGCGCGGa -3'
miRNA:   3'- uGCU-GCUCaGGGCCCUA---UGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 21745 0.67 0.75879
Target:  5'- uGCGGCGGcgaCCGGGAcGCCggcccuuuauguGCGCGAg -3'
miRNA:   3'- -UGCUGCUcagGGCCCUaUGG------------CGCGCU- -5'
5273 5' -59 NC_001798.1 + 22957 0.67 0.75879
Target:  5'- cCGACGAggcggccccggcGUCCgGGGAgGCCGuCGaCGAg -3'
miRNA:   3'- uGCUGCU------------CAGGgCCCUaUGGC-GC-GCU- -5'
5273 5' -59 NC_001798.1 + 23544 0.74 0.384456
Target:  5'- gACGACGAGgaggCgGGGGUGCC-CGCGAg -3'
miRNA:   3'- -UGCUGCUCag--GgCCCUAUGGcGCGCU- -5'
5273 5' -59 NC_001798.1 + 24415 0.66 0.820306
Target:  5'- gGCGGCGGcGUCgCCGGccGAcgAgCGCGCGGu -3'
miRNA:   3'- -UGCUGCU-CAG-GGCC--CUa-UgGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 24600 0.67 0.75879
Target:  5'- cCGugGAGUgCCUGGccgccUGCCGCGgGAu -3'
miRNA:   3'- uGCugCUCA-GGGCCcu---AUGGCGCgCU- -5'
5273 5' -59 NC_001798.1 + 25805 0.66 0.828517
Target:  5'- cCGugGAGuUCCUGGGGcugcugGCCgGCGCc- -3'
miRNA:   3'- uGCugCUC-AGGGCCCUa-----UGG-CGCGcu -5'
5273 5' -59 NC_001798.1 + 26352 0.71 0.53529
Target:  5'- cGCGGCG-G-CCCGGcGGaGCUGCGCGGg -3'
miRNA:   3'- -UGCUGCuCaGGGCC-CUaUGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 26421 0.7 0.583797
Target:  5'- gGCGACGcGccCCCGcuGGUGCUGCGCGAc -3'
miRNA:   3'- -UGCUGCuCa-GGGCc-CUAUGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 27492 0.7 0.59362
Target:  5'- -gGGCGGG-CgCGGGAaaaaaGCCGCGCGGg -3'
miRNA:   3'- ugCUGCUCaGgGCCCUa----UGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 28357 0.67 0.737323
Target:  5'- gGCGGCGGccccccgcguccccgCCCGcGGAcgcGCCGCGCGGg -3'
miRNA:   3'- -UGCUGCUca-------------GGGC-CCUa--UGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 28623 0.69 0.633106
Target:  5'- cCGACGggGGUCCUGGG----CGCGCGAg -3'
miRNA:   3'- uGCUGC--UCAGGGCCCuaugGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 28657 0.7 0.583797
Target:  5'- cGCGACcGGUUCCGGc--GCCGCGUGGc -3'
miRNA:   3'- -UGCUGcUCAGGGCCcuaUGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 30759 0.72 0.461011
Target:  5'- cGCGugGAGg-CCGaGGcgGCCGUGCGGg -3'
miRNA:   3'- -UGCugCUCagGGC-CCuaUGGCGCGCU- -5'
5273 5' -59 NC_001798.1 + 32366 0.66 0.803415
Target:  5'- gGCGGCcccGAG-CCCGGG--GCC-CGCGAc -3'
miRNA:   3'- -UGCUG---CUCaGGGCCCuaUGGcGCGCU- -5'
5273 5' -59 NC_001798.1 + 34731 0.67 0.785944
Target:  5'- -gGGCGAGggucgggCCCGGGA-GCgGgGCGGc -3'
miRNA:   3'- ugCUGCUCa------GGGCCCUaUGgCgCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.