miRNA display CGI


Results 21 - 40 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5276 3' -56 NC_001798.1 + 19787 0.7 0.733489
Target:  5'- gGCGGCGGggaaGCGCauuuuuCGGcaccCGUCCUCGCGu -3'
miRNA:   3'- -CGCUGCU----UGCG------GCCuu--GCAGGAGCGU- -5'
5276 3' -56 NC_001798.1 + 20469 0.67 0.90457
Target:  5'- gGCGAgcaGAGCGCCGGuGCG-CgUgCGCGa -3'
miRNA:   3'- -CGCUg--CUUGCGGCCuUGCaGgA-GCGU- -5'
5276 3' -56 NC_001798.1 + 20871 0.66 0.927282
Target:  5'- cCGACGAGCuggggaggaCGGGGCGUCUgCGCu -3'
miRNA:   3'- cGCUGCUUGcg-------GCCUUGCAGGaGCGu -5'
5276 3' -56 NC_001798.1 + 21745 0.67 0.875421
Target:  5'- uGCGGCG-GCGaCCGGGACG-CCggcccuuuaugugCGCGa -3'
miRNA:   3'- -CGCUGCuUGC-GGCCUUGCaGGa------------GCGU- -5'
5276 3' -56 NC_001798.1 + 22344 0.76 0.423509
Target:  5'- cGCG-CGGGCGUCGGGGCGgggCCgCGCAu -3'
miRNA:   3'- -CGCuGCUUGCGGCCUUGCa--GGaGCGU- -5'
5276 3' -56 NC_001798.1 + 22990 0.69 0.79842
Target:  5'- uCGACGAGCcuGCCGcGGACGgcgucgUCUCGCc -3'
miRNA:   3'- cGCUGCUUG--CGGC-CUUGCa-----GGAGCGu -5'
5276 3' -56 NC_001798.1 + 23675 0.68 0.848533
Target:  5'- cGCGGCGGugGCCGGccgcGACG-CCacgggcCGCu -3'
miRNA:   3'- -CGCUGCUugCGGCC----UUGCaGGa-----GCGu -5'
5276 3' -56 NC_001798.1 + 24415 0.67 0.90457
Target:  5'- gGCGGCGGcguCGCCGGccGACGagCgCGCGg -3'
miRNA:   3'- -CGCUGCUu--GCGGCC--UUGCagGaGCGU- -5'
5276 3' -56 NC_001798.1 + 24543 0.68 0.855497
Target:  5'- aCGACGAcgGCGCCGGcggugguGGCGgcggCCggcgCGCGg -3'
miRNA:   3'- cGCUGCU--UGCGGCC-------UUGCa---GGa---GCGU- -5'
5276 3' -56 NC_001798.1 + 26445 0.67 0.898321
Target:  5'- cGCGACGAcgcggACGCgGGccCGcCCcCGCAg -3'
miRNA:   3'- -CGCUGCU-----UGCGgCCuuGCaGGaGCGU- -5'
5276 3' -56 NC_001798.1 + 28064 0.82 0.205008
Target:  5'- cGCGGuCGAgagcGCGCCGGccGCGUCCUCGCu -3'
miRNA:   3'- -CGCU-GCU----UGCGGCCu-UGCAGGAGCGu -5'
5276 3' -56 NC_001798.1 + 28134 0.72 0.624156
Target:  5'- aGCGACGAcgcggacuACGCCGGcAACGaCgaCGCAg -3'
miRNA:   3'- -CGCUGCU--------UGCGGCC-UUGCaGgaGCGU- -5'
5276 3' -56 NC_001798.1 + 37987 0.68 0.832514
Target:  5'- cGCGGgGGAUGCacCGGAGaCGUCCUUGa- -3'
miRNA:   3'- -CGCUgCUUGCG--GCCUU-GCAGGAGCgu -5'
5276 3' -56 NC_001798.1 + 39548 0.74 0.554238
Target:  5'- cCGugGGugGCGCCGGGGcCGUCCgucCGCGc -3'
miRNA:   3'- cGCugCU--UGCGGCCUU-GCAGGa--GCGU- -5'
5276 3' -56 NC_001798.1 + 42236 1.1 0.003118
Target:  5'- gGCGACGAACGCCGGAACGUCCUCGCAc -3'
miRNA:   3'- -CGCUGCUUGCGGCCUUGCAGGAGCGU- -5'
5276 3' -56 NC_001798.1 + 46028 0.7 0.780468
Target:  5'- cGCGACGAGCaGCUGG-GCGaCCUUGg- -3'
miRNA:   3'- -CGCUGCUUG-CGGCCuUGCaGGAGCgu -5'
5276 3' -56 NC_001798.1 + 47790 0.67 0.878245
Target:  5'- cGCG-CGAccGCGUCGuucGGCGUCCgUCGCGg -3'
miRNA:   3'- -CGCuGCU--UGCGGCc--UUGCAGG-AGCGU- -5'
5276 3' -56 NC_001798.1 + 48867 0.66 0.932382
Target:  5'- cCGcCGGGCGCuCGGGcACGUCUcauUCGCc -3'
miRNA:   3'- cGCuGCUUGCG-GCCU-UGCAGG---AGCGu -5'
5276 3' -56 NC_001798.1 + 50682 0.68 0.848533
Target:  5'- -aGGCaGGCGCgCGGGuccCGUUCUCGCAu -3'
miRNA:   3'- cgCUGcUUGCG-GCCUu--GCAGGAGCGU- -5'
5276 3' -56 NC_001798.1 + 51190 0.72 0.64429
Target:  5'- gGCGGCGccccccCGCCGG-GCGUCCUuucCGCGc -3'
miRNA:   3'- -CGCUGCuu----GCGGCCuUGCAGGA---GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.