miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5276 3' -56 NC_001798.1 + 1442 0.73 0.614094
Target:  5'- cGCGguGCGAguGCGCCu---CGUCCUCGCAg -3'
miRNA:   3'- -CGC--UGCU--UGCGGccuuGCAGGAGCGU- -5'
5276 3' -56 NC_001798.1 + 1512 0.7 0.74309
Target:  5'- gGCGGCGGcccggccguccaGCGCCGGGagcacggcgcgGCGguaCUCGCGc -3'
miRNA:   3'- -CGCUGCU------------UGCGGCCU-----------UGCag-GAGCGU- -5'
5276 3' -56 NC_001798.1 + 2249 0.68 0.863793
Target:  5'- gGCGGCGGGCGCgccgccggggggCGGGGCGg---CGCAg -3'
miRNA:   3'- -CGCUGCUUGCG------------GCCUUGCaggaGCGU- -5'
5276 3' -56 NC_001798.1 + 2564 0.66 0.916386
Target:  5'- aGgGGCGGcCGCgGGGcgggggGCGUCCgCGCGg -3'
miRNA:   3'- -CgCUGCUuGCGgCCU------UGCAGGaGCGU- -5'
5276 3' -56 NC_001798.1 + 2628 0.68 0.871122
Target:  5'- gGCGGCGcccugGCCGGGGCGgggCuCUUGCGc -3'
miRNA:   3'- -CGCUGCuug--CGGCCUUGCa--G-GAGCGU- -5'
5276 3' -56 NC_001798.1 + 2973 0.66 0.927282
Target:  5'- uCGGCGuGCGgCGGGGCGgccggCC-CGCGg -3'
miRNA:   3'- cGCUGCuUGCgGCCUUGCa----GGaGCGU- -5'
5276 3' -56 NC_001798.1 + 3331 0.73 0.594017
Target:  5'- gGCGGCGGGCuucCCGcGGGCGUCgUCGCc -3'
miRNA:   3'- -CGCUGCUUGc--GGC-CUUGCAGgAGCGu -5'
5276 3' -56 NC_001798.1 + 3773 0.73 0.594017
Target:  5'- gGCGcccacACGGGCGCCGGGGCGcccgaggCCUCGa- -3'
miRNA:   3'- -CGC-----UGCUUGCGGCCUUGCa------GGAGCgu -5'
5276 3' -56 NC_001798.1 + 4119 0.68 0.829224
Target:  5'- -gGGCGGGCucgGCCGGGGCGccgcccccggggcCCUCGCGg -3'
miRNA:   3'- cgCUGCUUG---CGGCCUUGCa------------GGAGCGU- -5'
5276 3' -56 NC_001798.1 + 4212 0.67 0.90457
Target:  5'- uGCGGCGcuggcgggGGCGCgGGcGGCGUCgUCGUc -3'
miRNA:   3'- -CGCUGC--------UUGCGgCC-UUGCAGgAGCGu -5'
5276 3' -56 NC_001798.1 + 4350 0.67 0.90457
Target:  5'- gGCGGcCGAGCGCCGGcggggGGCGcgCCg-GCGg -3'
miRNA:   3'- -CGCU-GCUUGCGGCC-----UUGCa-GGagCGU- -5'
5276 3' -56 NC_001798.1 + 4732 0.7 0.771295
Target:  5'- uCGACGGccuccccggACGCCGGGGcCG-CCUCGUc -3'
miRNA:   3'- cGCUGCU---------UGCGGCCUU-GCaGGAGCGu -5'
5276 3' -56 NC_001798.1 + 4779 0.7 0.762002
Target:  5'- gGCGGCGGcguCGUCGGccuCGUCUUCGUu -3'
miRNA:   3'- -CGCUGCUu--GCGGCCuu-GCAGGAGCGu -5'
5276 3' -56 NC_001798.1 + 5922 0.68 0.863793
Target:  5'- -gGACGGGgGgCGGGcCGuUCCUCGCGc -3'
miRNA:   3'- cgCUGCUUgCgGCCUuGC-AGGAGCGU- -5'
5276 3' -56 NC_001798.1 + 8853 0.68 0.871122
Target:  5'- uCGGCGG--GCCGGGAgGUCaUCGCGg -3'
miRNA:   3'- cGCUGCUugCGGCCUUgCAGgAGCGU- -5'
5276 3' -56 NC_001798.1 + 8946 0.7 0.770371
Target:  5'- uGCGGCGGGguggcCGCCGGAccuuuauGCG-CCUCgGCGa -3'
miRNA:   3'- -CGCUGCUU-----GCGGCCU-------UGCaGGAG-CGU- -5'
5276 3' -56 NC_001798.1 + 10759 0.85 0.141163
Target:  5'- uGCGuuccGCGGGCGCCGGAagcaacaccACGUCCUCGCc -3'
miRNA:   3'- -CGC----UGCUUGCGGCCU---------UGCAGGAGCGu -5'
5276 3' -56 NC_001798.1 + 14001 0.67 0.898321
Target:  5'- uUGGgGAuCGCCGGAuuauuuCGUCCUuccCGCAc -3'
miRNA:   3'- cGCUgCUuGCGGCCUu-----GCAGGA---GCGU- -5'
5276 3' -56 NC_001798.1 + 16619 0.7 0.771295
Target:  5'- cGUGACGGacgacGCGCCGGGGCaggUCUUGCc -3'
miRNA:   3'- -CGCUGCU-----UGCGGCCUUGca-GGAGCGu -5'
5276 3' -56 NC_001798.1 + 18138 0.67 0.898321
Target:  5'- cGCGGCGuccACGauGGggUaGUCCUCGUc -3'
miRNA:   3'- -CGCUGCu--UGCggCCuuG-CAGGAGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.