miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5276 3' -56 NC_001798.1 + 42236 1.1 0.003118
Target:  5'- gGCGACGAACGCCGGAACGUCCUCGCAc -3'
miRNA:   3'- -CGCUGCUUGCGGCCUUGCAGGAGCGU- -5'
5276 3' -56 NC_001798.1 + 10759 0.85 0.141163
Target:  5'- uGCGuuccGCGGGCGCCGGAagcaacaccACGUCCUCGCc -3'
miRNA:   3'- -CGC----UGCUUGCGGCCU---------UGCAGGAGCGu -5'
5276 3' -56 NC_001798.1 + 28064 0.82 0.205008
Target:  5'- cGCGGuCGAgagcGCGCCGGccGCGUCCUCGCu -3'
miRNA:   3'- -CGCU-GCU----UGCGGCCu-UGCAGGAGCGu -5'
5276 3' -56 NC_001798.1 + 86907 0.78 0.334762
Target:  5'- gGCGugGAGCGCCGG-GCcUCC-CGCAa -3'
miRNA:   3'- -CGCugCUUGCGGCCuUGcAGGaGCGU- -5'
5276 3' -56 NC_001798.1 + 147544 0.76 0.406345
Target:  5'- cGCGccccuCGAACGCCGc-GCGUUCUCGCAg -3'
miRNA:   3'- -CGCu----GCUUGCGGCcuUGCAGGAGCGU- -5'
5276 3' -56 NC_001798.1 + 22344 0.76 0.423509
Target:  5'- cGCG-CGGGCGUCGGGGCGgggCCgCGCAu -3'
miRNA:   3'- -CGCuGCUUGCGGCCUUGCa--GGaGCGU- -5'
5276 3' -56 NC_001798.1 + 67366 0.76 0.431374
Target:  5'- cGCGACGAagGCGCCGGuggacguAGCGcCCUCGa- -3'
miRNA:   3'- -CGCUGCU--UGCGGCC-------UUGCaGGAGCgu -5'
5276 3' -56 NC_001798.1 + 80344 0.76 0.4411
Target:  5'- cGgGACccAGCGCCGGGACGUCCcggCGCu -3'
miRNA:   3'- -CgCUGc-UUGCGGCCUUGCAGGa--GCGu -5'
5276 3' -56 NC_001798.1 + 81105 0.75 0.459099
Target:  5'- cGCGGCGAGCGCCGccGACGcggaccccuUCUUCGCGc -3'
miRNA:   3'- -CGCUGCUUGCGGCc-UUGC---------AGGAGCGU- -5'
5276 3' -56 NC_001798.1 + 128881 0.75 0.468243
Target:  5'- cGCGGCGAuCGCCGGAgGCGUuCCggGCGu -3'
miRNA:   3'- -CGCUGCUuGCGGCCU-UGCA-GGagCGU- -5'
5276 3' -56 NC_001798.1 + 39548 0.74 0.554238
Target:  5'- cCGugGGugGCGCCGGGGcCGUCCgucCGCGc -3'
miRNA:   3'- cGCugCU--UGCGGCCUU-GCAGGa--GCGU- -5'
5276 3' -56 NC_001798.1 + 153084 0.74 0.554238
Target:  5'- aGCGGCGGggcgGCGCCGGGc---CCUCGCGg -3'
miRNA:   3'- -CGCUGCU----UGCGGCCUugcaGGAGCGU- -5'
5276 3' -56 NC_001798.1 + 69492 0.73 0.583017
Target:  5'- aGCGAUGGgcgggcgcaggacGCGCCGGAGCGgggcguggCC-CGCGa -3'
miRNA:   3'- -CGCUGCU-------------UGCGGCCUUGCa-------GGaGCGU- -5'
5276 3' -56 NC_001798.1 + 81332 0.73 0.584016
Target:  5'- gGCaGGCGGAC-CCGGGG-GUCCUCGCc -3'
miRNA:   3'- -CG-CUGCUUGcGGCCUUgCAGGAGCGu -5'
5276 3' -56 NC_001798.1 + 3773 0.73 0.594017
Target:  5'- gGCGcccacACGGGCGCCGGGGCGcccgaggCCUCGa- -3'
miRNA:   3'- -CGC-----UGCUUGCGGCCUUGCa------GGAGCgu -5'
5276 3' -56 NC_001798.1 + 3331 0.73 0.594017
Target:  5'- gGCGGCGGGCuucCCGcGGGCGUCgUCGCc -3'
miRNA:   3'- -CGCUGCUUGc--GGC-CUUGCAGgAGCGu -5'
5276 3' -56 NC_001798.1 + 154080 0.73 0.603042
Target:  5'- cGCGGCacggcugGAGCGCCGGGGCGcggCCggCGCc -3'
miRNA:   3'- -CGCUG-------CUUGCGGCCUUGCa--GGa-GCGu -5'
5276 3' -56 NC_001798.1 + 1442 0.73 0.614094
Target:  5'- cGCGguGCGAguGCGCCu---CGUCCUCGCAg -3'
miRNA:   3'- -CGC--UGCU--UGCGGccuuGCAGGAGCGU- -5'
5276 3' -56 NC_001798.1 + 28134 0.72 0.624156
Target:  5'- aGCGACGAcgcggacuACGCCGGcAACGaCgaCGCAg -3'
miRNA:   3'- -CGCUGCU--------UGCGGCC-UUGCaGgaGCGU- -5'
5276 3' -56 NC_001798.1 + 149988 0.72 0.634224
Target:  5'- gGCGcccGCGGACGCCGGGGCGagcggCC-CGUg -3'
miRNA:   3'- -CGC---UGCUUGCGGCCUUGCa----GGaGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.