miRNA display CGI


Results 21 - 40 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5276 5' -52.7 NC_001798.1 + 6526 0.7 0.868561
Target:  5'- -aCGgGggGACGGGgG--GACgGGCCg -3'
miRNA:   3'- uaGUgCuuCUGCCCgUuaUUGgCCGG- -5'
5276 5' -52.7 NC_001798.1 + 6568 0.7 0.883291
Target:  5'- -cCGgGggGACGGGgG--GACgGGCCg -3'
miRNA:   3'- uaGUgCuuCUGCCCgUuaUUGgCCGG- -5'
5276 5' -52.7 NC_001798.1 + 6610 0.7 0.883291
Target:  5'- -cCGgGggGACGGGgG--GACgGGCCg -3'
miRNA:   3'- uaGUgCuuCUGCCCgUuaUUGgCCGG- -5'
5276 5' -52.7 NC_001798.1 + 8653 0.77 0.507327
Target:  5'- -cCACGAcgAGACaGGCGAUAACCaGCCc -3'
miRNA:   3'- uaGUGCU--UCUGcCCGUUAUUGGcCGG- -5'
5276 5' -52.7 NC_001798.1 + 9694 0.69 0.921768
Target:  5'- cUCACGugcGGGCGGGUGGgcucGACgGGCUc -3'
miRNA:   3'- uAGUGCu--UCUGCCCGUUa---UUGgCCGG- -5'
5276 5' -52.7 NC_001798.1 + 9943 0.66 0.97986
Target:  5'- cAUCGCGgcGGgGGcGUAGUccuggaacAGCCGGCg -3'
miRNA:   3'- -UAGUGCuuCUgCC-CGUUA--------UUGGCCGg -5'
5276 5' -52.7 NC_001798.1 + 11172 0.68 0.932097
Target:  5'- -cCACGAugggggcGGugGGGCG--GGCCuGCCg -3'
miRNA:   3'- uaGUGCU-------UCugCCCGUuaUUGGcCGG- -5'
5276 5' -52.7 NC_001798.1 + 11392 0.68 0.947016
Target:  5'- cUC-CGAGG-CGGGCcAUGGCC-GCCu -3'
miRNA:   3'- uAGuGCUUCuGCCCGuUAUUGGcCGG- -5'
5276 5' -52.7 NC_001798.1 + 15339 0.67 0.950905
Target:  5'- -gCGCGGuagcgggGGGCGaGGCGGUGaggggggaAUCGGCCg -3'
miRNA:   3'- uaGUGCU-------UCUGC-CCGUUAU--------UGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 16181 0.66 0.975002
Target:  5'- -cCGCGggGAcCGGGgGGacgcACgGGCCg -3'
miRNA:   3'- uaGUGCuuCU-GCCCgUUau--UGgCCGG- -5'
5276 5' -52.7 NC_001798.1 + 17680 0.67 0.955392
Target:  5'- gAUCGCGggGugGuucaGGCGucucagcAGCCGcGCCu -3'
miRNA:   3'- -UAGUGCuuCugC----CCGUua-----UUGGC-CGG- -5'
5276 5' -52.7 NC_001798.1 + 18004 0.67 0.950905
Target:  5'- -aCAgGAGGAuggccgcuggcucCGGGCAGggGGgCGGCCg -3'
miRNA:   3'- uaGUgCUUCU-------------GCCCGUUa-UUgGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 19140 0.66 0.969341
Target:  5'- -cCACGAAGACcaacgacgcguGGGUGGgggAACCguGGCCc -3'
miRNA:   3'- uaGUGCUUCUG-----------CCCGUUa--UUGG--CCGG- -5'
5276 5' -52.7 NC_001798.1 + 19992 0.67 0.951325
Target:  5'- -aCGCGGAuucCGGGUucucccGGCCGGCCg -3'
miRNA:   3'- uaGUGCUUcu-GCCCGuua---UUGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 21030 0.74 0.703503
Target:  5'- -cCACGAAGGCGGcGC-----CCGGCCu -3'
miRNA:   3'- uaGUGCUUCUGCC-CGuuauuGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 22106 0.66 0.969341
Target:  5'- -cCGCGGAccaACgGGGCGAccucGCCGGCCc -3'
miRNA:   3'- uaGUGCUUc--UG-CCCGUUau--UGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 22301 0.68 0.942463
Target:  5'- --aGCGgcGGCGGcGCGAccAACgGGCCg -3'
miRNA:   3'- uagUGCuuCUGCC-CGUUa-UUGgCCGG- -5'
5276 5' -52.7 NC_001798.1 + 22512 0.68 0.942463
Target:  5'- -aCACGGAG-CGcGGCuaccGACgCGGCCg -3'
miRNA:   3'- uaGUGCUUCuGC-CCGuua-UUG-GCCGG- -5'
5276 5' -52.7 NC_001798.1 + 22768 0.7 0.852942
Target:  5'- --gACGAGGACGGGgGAcgucuCCgGGCCg -3'
miRNA:   3'- uagUGCUUCUGCCCgUUauu--GG-CCGG- -5'
5276 5' -52.7 NC_001798.1 + 23566 0.73 0.713729
Target:  5'- -cCGCGAGGGCcccggGGGCGGcgccCCGGCCg -3'
miRNA:   3'- uaGUGCUUCUG-----CCCGUUauu-GGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.