miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5276 5' -52.7 NC_001798.1 + 62 0.76 0.568175
Target:  5'- -gCGCGAAGGCGGGCGGcggcGGCgGGCg -3'
miRNA:   3'- uaGUGCUUCUGCCCGUUa---UUGgCCGg -5'
5276 5' -52.7 NC_001798.1 + 236 0.66 0.982007
Target:  5'- -gCGCGGcaGGACGGGgAcUAGCaGGCUg -3'
miRNA:   3'- uaGUGCU--UCUGCCCgUuAUUGgCCGG- -5'
5276 5' -52.7 NC_001798.1 + 1245 0.67 0.951325
Target:  5'- uAUCuGCGggGGCGGGCccgcguCCGcGUCg -3'
miRNA:   3'- -UAG-UGCuuCUGCCCGuuauu-GGC-CGG- -5'
5276 5' -52.7 NC_001798.1 + 1394 0.66 0.982007
Target:  5'- -cCACGuAGACGGGCcgc-AgCGGCg -3'
miRNA:   3'- uaGUGCuUCUGCCCGuuauUgGCCGg -5'
5276 5' -52.7 NC_001798.1 + 1869 0.71 0.810365
Target:  5'- --gACGAugAGGCGGcggucGCAGgcGCCGGCCa -3'
miRNA:   3'- uagUGCU--UCUGCC-----CGUUauUGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 2341 0.69 0.897089
Target:  5'- -gCGCGggGaagaGCGGGUggUccgugAGCuCGGCCa -3'
miRNA:   3'- uaGUGCuuC----UGCCCGuuA-----UUG-GCCGG- -5'
5276 5' -52.7 NC_001798.1 + 2529 0.66 0.977527
Target:  5'- --gGCGucGGCgGGGCGGggGGCgCGGCCc -3'
miRNA:   3'- uagUGCuuCUG-CCCGUUa-UUG-GCCGG- -5'
5276 5' -52.7 NC_001798.1 + 2677 0.76 0.547637
Target:  5'- -gCGCGGAGGCGGGCGcggcgAGCgaguCGGCCg -3'
miRNA:   3'- uaGUGCUUCUGCCCGUua---UUG----GCCGG- -5'
5276 5' -52.7 NC_001798.1 + 2968 0.7 0.883291
Target:  5'- -gCGCGucGGCGugcGGCGGggcGGCCGGCCc -3'
miRNA:   3'- uaGUGCuuCUGC---CCGUUa--UUGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 3010 0.77 0.497443
Target:  5'- -gCGCGggGGCGcGGCGGgccgggcuCCGGCCa -3'
miRNA:   3'- uaGUGCuuCUGC-CCGUUauu-----GGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 3207 0.7 0.87604
Target:  5'- -gCGCGGAGGCGGGCGcgGcGCUcaGGCg -3'
miRNA:   3'- uaGUGCUUCUGCCCGUuaU-UGG--CCGg -5'
5276 5' -52.7 NC_001798.1 + 3438 0.68 0.932615
Target:  5'- -gCGCGuAGGCGcGGCGcaGGCUGGUCa -3'
miRNA:   3'- uaGUGCuUCUGC-CCGUuaUUGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 3889 0.72 0.79209
Target:  5'- -cCcCGggGGCGGGg---GGCCGGCCc -3'
miRNA:   3'- uaGuGCuuCUGCCCguuaUUGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 4085 0.67 0.955392
Target:  5'- -cCGCGggGGucCGGGCcggggcgGGCuCGGCCc -3'
miRNA:   3'- uaGUGCuuCU--GCCCGuua----UUG-GCCGG- -5'
5276 5' -52.7 NC_001798.1 + 4895 0.66 0.975002
Target:  5'- gAUC-CGGAGAUccgGGGCc---GCCGGUCg -3'
miRNA:   3'- -UAGuGCUUCUG---CCCGuuauUGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 6028 0.67 0.955392
Target:  5'- cAUCGCGAAGG-GGGCcacagcgagacaGAgacGCCGGCg -3'
miRNA:   3'- -UAGUGCUUCUgCCCG------------UUau-UGGCCGg -5'
5276 5' -52.7 NC_001798.1 + 6238 0.75 0.641157
Target:  5'- -cCGgGggGACGGGCGGgggacgggggGACgGGCCg -3'
miRNA:   3'- uaGUgCuuCUGCCCGUUa---------UUGgCCGG- -5'
5276 5' -52.7 NC_001798.1 + 6283 0.74 0.672485
Target:  5'- -cCGgGggGACGGGCcgggggGACgGGCCg -3'
miRNA:   3'- uaGUgCuuCUGCCCGuua---UUGgCCGG- -5'
5276 5' -52.7 NC_001798.1 + 6322 0.74 0.672485
Target:  5'- -cCGgGggGACGGGCcgggggGACgGGCCg -3'
miRNA:   3'- uaGUgCuuCUGCCCGuua---UUGgCCGG- -5'
5276 5' -52.7 NC_001798.1 + 6348 0.74 0.703503
Target:  5'- -nCGgGggGACGGGCcgggggGACgGGCCg -3'
miRNA:   3'- uaGUgCuuCUGCCCGuua---UUGgCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.