miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5276 5' -52.7 NC_001798.1 + 42272 1.11 0.004208
Target:  5'- gAUCACGAAGACGGGCAAUAACCGGCCg -3'
miRNA:   3'- -UAGUGCUUCUGCCCGUUAUUGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 113334 0.8 0.377433
Target:  5'- uAUUACGGguggaccGGACGGGCGGUGgcGCCGGCa -3'
miRNA:   3'- -UAGUGCU-------UCUGCCCGUUAU--UGGCCGg -5'
5276 5' -52.7 NC_001798.1 + 57040 0.79 0.421859
Target:  5'- -gUACGcGGACGGGCGGUccguCCGGCCc -3'
miRNA:   3'- uaGUGCuUCUGCCCGUUAuu--GGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 25700 0.79 0.430933
Target:  5'- -cCACGGccgccuGGGCGGGCAAcugGACCGGCg -3'
miRNA:   3'- uaGUGCU------UCUGCCCGUUa--UUGGCCGg -5'
5276 5' -52.7 NC_001798.1 + 132595 0.78 0.458823
Target:  5'- -cCACGuGGugagcgccaGCGGGCAGUGGCCGGCa -3'
miRNA:   3'- uaGUGCuUC---------UGCCCGUUAUUGGCCGg -5'
5276 5' -52.7 NC_001798.1 + 43473 0.78 0.468332
Target:  5'- -aCGCGggGGCGGGCGugagGGCC-GCCg -3'
miRNA:   3'- uaGUGCuuCUGCCCGUua--UUGGcCGG- -5'
5276 5' -52.7 NC_001798.1 + 24579 0.78 0.468332
Target:  5'- -gCGCGGAGGCGGGCcgcGUGGCCguggagugccuGGCCg -3'
miRNA:   3'- uaGUGCUUCUGCCCGu--UAUUGG-----------CCGG- -5'
5276 5' -52.7 NC_001798.1 + 3010 0.77 0.497443
Target:  5'- -gCGCGggGGCGcGGCGGgccgggcuCCGGCCa -3'
miRNA:   3'- uaGUGCuuCUGC-CCGUUauu-----GGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 8653 0.77 0.507327
Target:  5'- -cCACGAcgAGACaGGCGAUAACCaGCCc -3'
miRNA:   3'- uaGUGCU--UCUGcCCGUUAUUGGcCGG- -5'
5276 5' -52.7 NC_001798.1 + 87184 0.77 0.517294
Target:  5'- -gCGCGGGcGACGGGCG---GCUGGCCa -3'
miRNA:   3'- uaGUGCUU-CUGCCCGUuauUGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 2677 0.76 0.547637
Target:  5'- -gCGCGGAGGCGGGCGcggcgAGCgaguCGGCCg -3'
miRNA:   3'- uaGUGCUUCUGCCCGUua---UUG----GCCGG- -5'
5276 5' -52.7 NC_001798.1 + 38074 0.76 0.547637
Target:  5'- uUCGCGcAAGACGGGCGGgugguUGACCaGGUCc -3'
miRNA:   3'- uAGUGC-UUCUGCCCGUU-----AUUGG-CCGG- -5'
5276 5' -52.7 NC_001798.1 + 30898 0.76 0.557879
Target:  5'- -gCACGGAcGACGaGGaCGAUGACCuGGCCg -3'
miRNA:   3'- uaGUGCUU-CUGC-CC-GUUAUUGG-CCGG- -5'
5276 5' -52.7 NC_001798.1 + 108846 0.76 0.568175
Target:  5'- cGUCugGAcGACGGGCG--GGCUGGCg -3'
miRNA:   3'- -UAGugCUuCUGCCCGUuaUUGGCCGg -5'
5276 5' -52.7 NC_001798.1 + 154400 0.76 0.568175
Target:  5'- -gCGCGAAGGCGGGCGGcggcGGCgGGCg -3'
miRNA:   3'- uaGUGCUUCUGCCCGUUa---UUGgCCGg -5'
5276 5' -52.7 NC_001798.1 + 62 0.76 0.568175
Target:  5'- -gCGCGAAGGCGGGCGGcggcGGCgGGCg -3'
miRNA:   3'- uaGUGCUUCUGCCCGUUa---UUGgCCGg -5'
5276 5' -52.7 NC_001798.1 + 6238 0.75 0.641157
Target:  5'- -cCGgGggGACGGGCGGgggacgggggGACgGGCCg -3'
miRNA:   3'- uaGUgCuuCUGCCCGUUa---------UUGgCCGG- -5'
5276 5' -52.7 NC_001798.1 + 122076 0.74 0.651619
Target:  5'- -aCGCGGAGGCGGuGC--UGGCgGGCCu -3'
miRNA:   3'- uaGUGCUUCUGCC-CGuuAUUGgCCGG- -5'
5276 5' -52.7 NC_001798.1 + 67717 0.74 0.655799
Target:  5'- --gGCGggG-UGGGCGGUAcgaccgaaaggacgcACCGGCCg -3'
miRNA:   3'- uagUGCuuCuGCCCGUUAU---------------UGGCCGG- -5'
5276 5' -52.7 NC_001798.1 + 96975 0.74 0.662065
Target:  5'- -gCGCGGAccgcGGCGGGCGGcggggccagGGCCGGCCc -3'
miRNA:   3'- uaGUGCUU----CUGCCCGUUa--------UUGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.