miRNA display CGI


Results 41 - 60 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5280 5' -56.4 NC_001798.1 + 23724 0.68 0.837534
Target:  5'- -cCCCGGCGGGUCgagcUGGaCGcCGAcgcgGCCu -3'
miRNA:   3'- uuGGGCUGCCCAGa---GCC-GCaGUU----UGG- -5'
5280 5' -56.4 NC_001798.1 + 23778 0.68 0.837534
Target:  5'- uACCgCGACGGGUacgUCaGCGggGAGCCg -3'
miRNA:   3'- uUGG-GCUGCCCAg--AGcCGCagUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 134325 0.68 0.832626
Target:  5'- gGACCCgcaGACGGGUCUggUcgugagggucgaaagGGCGUCGuggGGCCc -3'
miRNA:   3'- -UUGGG---CUGCCCAGA--G---------------CCGCAGU---UUGG- -5'
5280 5' -56.4 NC_001798.1 + 20290 0.68 0.829318
Target:  5'- cGGCCCcaGGCGGGUC-CGGCaGU--AGCCc -3'
miRNA:   3'- -UUGGG--CUGCCCAGaGCCG-CAguUUGG- -5'
5280 5' -56.4 NC_001798.1 + 105366 0.68 0.820927
Target:  5'- gAugUCGACGGGcagCUCGGCG----GCCu -3'
miRNA:   3'- -UugGGCUGCCCa--GAGCCGCaguuUGG- -5'
5280 5' -56.4 NC_001798.1 + 112526 0.68 0.803648
Target:  5'- gGACCCGugGGuugcUCUCGcGCGU---GCCg -3'
miRNA:   3'- -UUGGGCugCCc---AGAGC-CGCAguuUGG- -5'
5280 5' -56.4 NC_001798.1 + 4413 0.68 0.803648
Target:  5'- gGGCgCCGG-GGGUCgCGGCGaCAGGCUg -3'
miRNA:   3'- -UUG-GGCUgCCCAGaGCCGCaGUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 36296 0.68 0.803648
Target:  5'- gGugCCGugGGuGUggCGGCGgggcgCGGGCCg -3'
miRNA:   3'- -UugGGCugCC-CAgaGCCGCa----GUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 102224 0.68 0.794776
Target:  5'- cGACCgGGCGcGG-CUCGGgG-CGGGCCu -3'
miRNA:   3'- -UUGGgCUGC-CCaGAGCCgCaGUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 73201 0.68 0.794776
Target:  5'- --aCCGACGGcGUguuucgcgcCUCGGCGUUucGGCCu -3'
miRNA:   3'- uugGGCUGCC-CA---------GAGCCGCAGu-UUGG- -5'
5280 5' -56.4 NC_001798.1 + 72144 0.68 0.794776
Target:  5'- cGGCCaccCGGG-C-CGGCGUCGGGCCc -3'
miRNA:   3'- -UUGGgcuGCCCaGaGCCGCAGUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 41364 0.68 0.794776
Target:  5'- uGACCCGGCGGcUCaUGGCGcCGgggauGGCCg -3'
miRNA:   3'- -UUGGGCUGCCcAGaGCCGCaGU-----UUGG- -5'
5280 5' -56.4 NC_001798.1 + 2461 0.69 0.784852
Target:  5'- cGCCCuGCGGGUCggggcccUCGGCGg---GCCg -3'
miRNA:   3'- uUGGGcUGCCCAG-------AGCCGCaguuUGG- -5'
5280 5' -56.4 NC_001798.1 + 34998 0.69 0.77661
Target:  5'- -cUCCGGcCGGGgcgcacCUCGGCGgcCAAGCCc -3'
miRNA:   3'- uuGGGCU-GCCCa-----GAGCCGCa-GUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 58382 0.69 0.767333
Target:  5'- gGGCCUGACGGag--CcGCGUCAGACCc -3'
miRNA:   3'- -UUGGGCUGCCcagaGcCGCAGUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 149970 0.69 0.757939
Target:  5'- aGACgCCGACGGGggcgCGGCGcccgCGGACg -3'
miRNA:   3'- -UUG-GGCUGCCCaga-GCCGCa---GUUUGg -5'
5280 5' -56.4 NC_001798.1 + 87993 0.69 0.757939
Target:  5'- -uCCCGGgGGGUCggcaugcgaCGGCGUCuc-CCg -3'
miRNA:   3'- uuGGGCUgCCCAGa--------GCCGCAGuuuGG- -5'
5280 5' -56.4 NC_001798.1 + 11169 0.69 0.757939
Target:  5'- uAACCaCGAUGGGgg-CGGUGgggCGGGCCu -3'
miRNA:   3'- -UUGG-GCUGCCCagaGCCGCa--GUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 134671 0.7 0.729137
Target:  5'- cACCCGcaGCGGGUCaCGGCG-CGGgugcugcuGCCg -3'
miRNA:   3'- uUGGGC--UGCCCAGaGCCGCaGUU--------UGG- -5'
5280 5' -56.4 NC_001798.1 + 32418 0.7 0.719361
Target:  5'- uGCCCaucgcGgGGGUCUCGaGCGUCGuGGCCc -3'
miRNA:   3'- uUGGGc----UgCCCAGAGC-CGCAGU-UUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.