miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5280 5' -56.4 NC_001798.1 + 39189 1.08 0.003233
Target:  5'- aAACCCGACGGGUCUCGGCGUCAAACCc -3'
miRNA:   3'- -UUGGGCUGCCCAGAGCCGCAGUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 28619 0.77 0.344657
Target:  5'- uGGCCCGACGGGggucCUgGGCGcgcgagCGGGCCg -3'
miRNA:   3'- -UUGGGCUGCCCa---GAgCCGCa-----GUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 37170 0.75 0.435612
Target:  5'- cGCCUGGCGGGccgCUCGGCGcgcCAGgcGCCg -3'
miRNA:   3'- uUGGGCUGCCCa--GAGCCGCa--GUU--UGG- -5'
5280 5' -56.4 NC_001798.1 + 80545 0.72 0.578682
Target:  5'- cGGCCCGGCGGGggggCgcgaGGCGUCccuccccgAGGCCc -3'
miRNA:   3'- -UUGGGCUGCCCa---Gag--CCGCAG--------UUUGG- -5'
5280 5' -56.4 NC_001798.1 + 44633 0.72 0.578682
Target:  5'- cGCCCGugGGGccaUUgGGCGcaUCGGACCg -3'
miRNA:   3'- uUGGGCugCCCa--GAgCCGC--AGUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 59266 0.72 0.578682
Target:  5'- gGGCCCGACGGcGcUCUCGGUG--AAGCUg -3'
miRNA:   3'- -UUGGGCUGCC-C-AGAGCCGCagUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 111597 0.72 0.588723
Target:  5'- gGGCCCGGCGGGg--CGGCcUCcugGAGCCc -3'
miRNA:   3'- -UUGGGCUGCCCagaGCCGcAG---UUUGG- -5'
5280 5' -56.4 NC_001798.1 + 45907 0.71 0.638236
Target:  5'- aAACCaaaauCGGCGGGUCUCGggggguggcggucGCGUCcgGAACCc -3'
miRNA:   3'- -UUGG-----GCUGCCCAGAGC-------------CGCAG--UUUGG- -5'
5280 5' -56.4 NC_001798.1 + 42002 0.71 0.648356
Target:  5'- -uUCUGACGcgaaccccuccacGGUCUcccCGGCGUCGGGCCg -3'
miRNA:   3'- uuGGGCUGC-------------CCAGA---GCCGCAGUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 51739 0.71 0.659473
Target:  5'- cGACCUGACGGa--UCGGCGggcaaAAACCa -3'
miRNA:   3'- -UUGGGCUGCCcagAGCCGCag---UUUGG- -5'
5280 5' -56.4 NC_001798.1 + 128082 0.71 0.679611
Target:  5'- cGACCCGAUGuGG--UCGGCGUCGgcGAUCc -3'
miRNA:   3'- -UUGGGCUGC-CCagAGCCGCAGU--UUGG- -5'
5280 5' -56.4 NC_001798.1 + 130068 0.7 0.709511
Target:  5'- gGugUCGuaaAUGGG-CUCGGCGUCGGGCa -3'
miRNA:   3'- -UugGGC---UGCCCaGAGCCGCAGUUUGg -5'
5280 5' -56.4 NC_001798.1 + 32418 0.7 0.719361
Target:  5'- uGCCCaucgcGgGGGUCUCGaGCGUCGuGGCCc -3'
miRNA:   3'- uUGGGc----UgCCCAGAGC-CGCAGU-UUGG- -5'
5280 5' -56.4 NC_001798.1 + 134671 0.7 0.729137
Target:  5'- cACCCGcaGCGGGUCaCGGCG-CGGgugcugcuGCCg -3'
miRNA:   3'- uUGGGC--UGCCCAGaGCCGCaGUU--------UGG- -5'
5280 5' -56.4 NC_001798.1 + 87993 0.69 0.757939
Target:  5'- -uCCCGGgGGGUCggcaugcgaCGGCGUCuc-CCg -3'
miRNA:   3'- uuGGGCUgCCCAGa--------GCCGCAGuuuGG- -5'
5280 5' -56.4 NC_001798.1 + 11169 0.69 0.757939
Target:  5'- uAACCaCGAUGGGgg-CGGUGgggCGGGCCu -3'
miRNA:   3'- -UUGG-GCUGCCCagaGCCGCa--GUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 149970 0.69 0.757939
Target:  5'- aGACgCCGACGGGggcgCGGCGcccgCGGACg -3'
miRNA:   3'- -UUG-GGCUGCCCaga-GCCGCa---GUUUGg -5'
5280 5' -56.4 NC_001798.1 + 58382 0.69 0.767333
Target:  5'- gGGCCUGACGGag--CcGCGUCAGACCc -3'
miRNA:   3'- -UUGGGCUGCCcagaGcCGCAGUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 34998 0.69 0.77661
Target:  5'- -cUCCGGcCGGGgcgcacCUCGGCGgcCAAGCCc -3'
miRNA:   3'- uuGGGCU-GCCCa-----GAGCCGCa-GUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 2461 0.69 0.784852
Target:  5'- cGCCCuGCGGGUCggggcccUCGGCGg---GCCg -3'
miRNA:   3'- uUGGGcUGCCCAG-------AGCCGCaguuUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.