miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5280 5' -56.4 NC_001798.1 + 1392 0.66 0.91455
Target:  5'- cGCCacguaGACGGGcCgcagCGGCGcgccCAGGCCc -3'
miRNA:   3'- uUGGg----CUGCCCaGa---GCCGCa---GUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 2461 0.69 0.784852
Target:  5'- cGCCCuGCGGGUCggggcccUCGGCGg---GCCg -3'
miRNA:   3'- uUGGGcUGCCCAG-------AGCCGCaguuUGG- -5'
5280 5' -56.4 NC_001798.1 + 4052 0.66 0.896158
Target:  5'- gGGCCCGGCGGcG-CUCcaGGCGgcccgCGGucGCCg -3'
miRNA:   3'- -UUGGGCUGCC-CaGAG--CCGCa----GUU--UGG- -5'
5280 5' -56.4 NC_001798.1 + 4112 0.66 0.902518
Target:  5'- cGGCCCugGGCGGG-CUCGGcCGgggcGCCg -3'
miRNA:   3'- -UUGGG--CUGCCCaGAGCC-GCaguuUGG- -5'
5280 5' -56.4 NC_001798.1 + 4413 0.68 0.803648
Target:  5'- gGGCgCCGG-GGGUCgCGGCGaCAGGCUg -3'
miRNA:   3'- -UUG-GGCUgCCCAGaGCCGCaGUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 11169 0.69 0.757939
Target:  5'- uAACCaCGAUGGGgg-CGGUGgggCGGGCCu -3'
miRNA:   3'- -UUGG-GCUGCCCagaGCCGCa--GUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 11656 0.66 0.902518
Target:  5'- -cCCCGGgggcggggguCGGGUCUCGGgGggaGGACg -3'
miRNA:   3'- uuGGGCU----------GCCCAGAGCCgCag-UUUGg -5'
5280 5' -56.4 NC_001798.1 + 12025 0.66 0.902518
Target:  5'- cGCCaCGGCGGGg--CGGCGggggCAugcggucaguguGACCa -3'
miRNA:   3'- uUGG-GCUGCCCagaGCCGCa---GU------------UUGG- -5'
5280 5' -56.4 NC_001798.1 + 15846 0.66 0.889573
Target:  5'- gGGCCCGAacguCGGGgucgaccccCUCGGgGUCuguCCg -3'
miRNA:   3'- -UUGGGCU----GCCCa--------GAGCCgCAGuuuGG- -5'
5280 5' -56.4 NC_001798.1 + 19055 0.67 0.853411
Target:  5'- cACCUGugGguGGUCggGGCGgCGGACCu -3'
miRNA:   3'- uUGGGCugC--CCAGagCCGCaGUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 20290 0.68 0.829318
Target:  5'- cGGCCCcaGGCGGGUC-CGGCaGU--AGCCc -3'
miRNA:   3'- -UUGGG--CUGCCCAGaGCCG-CAguUUGG- -5'
5280 5' -56.4 NC_001798.1 + 23519 0.66 0.889573
Target:  5'- cGCCgCgGGCGGGaccCUCGGCG-CGGACg -3'
miRNA:   3'- uUGG-G-CUGCCCa--GAGCCGCaGUUUGg -5'
5280 5' -56.4 NC_001798.1 + 23724 0.68 0.837534
Target:  5'- -cCCCGGCGGGUCgagcUGGaCGcCGAcgcgGCCu -3'
miRNA:   3'- uuGGGCUGCCCAGa---GCC-GCaGUU----UGG- -5'
5280 5' -56.4 NC_001798.1 + 23778 0.68 0.837534
Target:  5'- uACCgCGACGGGUacgUCaGCGggGAGCCg -3'
miRNA:   3'- uUGG-GCUGCCCAg--AGcCGCagUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 26518 0.67 0.844773
Target:  5'- uGGCCgCGGCGGG-CggCGGCGUgGAggugguggggaccGCCg -3'
miRNA:   3'- -UUGG-GCUGCCCaGa-GCCGCAgUU-------------UGG- -5'
5280 5' -56.4 NC_001798.1 + 28619 0.77 0.344657
Target:  5'- uGGCCCGACGGGggucCUgGGCGcgcgagCGGGCCg -3'
miRNA:   3'- -UUGGGCUGCCCa---GAgCCGCa-----GUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 32418 0.7 0.719361
Target:  5'- uGCCCaucgcGgGGGUCUCGaGCGUCGuGGCCc -3'
miRNA:   3'- uUGGGc----UgCCCAGAGC-CGCAGU-UUGG- -5'
5280 5' -56.4 NC_001798.1 + 34998 0.69 0.77661
Target:  5'- -cUCCGGcCGGGgcgcacCUCGGCGgcCAAGCCc -3'
miRNA:   3'- uuGGGCU-GCCCa-----GAGCCGCa-GUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 36296 0.68 0.803648
Target:  5'- gGugCCGugGGuGUggCGGCGgggcgCGGGCCg -3'
miRNA:   3'- -UugGGCugCC-CAgaGCCGCa----GUUUGG- -5'
5280 5' -56.4 NC_001798.1 + 36510 0.66 0.91455
Target:  5'- cGGCCgGGCGGGggCgcgCGGCGgcCGGGCg -3'
miRNA:   3'- -UUGGgCUGCCCa-Ga--GCCGCa-GUUUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.