miRNA display CGI


Results 41 - 60 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5282 3' -55.7 NC_001798.1 + 13048 0.69 0.784505
Target:  5'- ---gGGggGauGCGcAGGGGGagagcguacuUGCAGGAGg -3'
miRNA:   3'- cuuaCCuuC--CGC-UCCCCU----------ACGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 14314 0.69 0.784505
Target:  5'- uGAGUGGggGGUGcguGGGGAggcgUGCGGu-- -3'
miRNA:   3'- -CUUACCuuCCGCu--CCCCU----ACGUCcuc -5'
5282 3' -55.7 NC_001798.1 + 27140 0.69 0.784505
Target:  5'- ---gGGAAGGCacGGGGc-GCGGGAGg -3'
miRNA:   3'- cuuaCCUUCCGcuCCCCuaCGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 49982 0.69 0.784505
Target:  5'- ---cGGAGGGCGAGuccGucAUGCGGGAGc -3'
miRNA:   3'- cuuaCCUUCCGCUC---CccUACGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 55993 0.69 0.784505
Target:  5'- ---cGcGggGGCGAGGGGcugGUAGGcGGg -3'
miRNA:   3'- cuuaC-CuuCCGCUCCCCua-CGUCC-UC- -5'
5282 3' -55.7 NC_001798.1 + 124502 0.69 0.784505
Target:  5'- -cAUGGcGGGgGGGGGGcUGCGGGc- -3'
miRNA:   3'- cuUACCuUCCgCUCCCCuACGUCCuc -5'
5282 3' -55.7 NC_001798.1 + 35804 0.69 0.775145
Target:  5'- ---cGGgcGGCGGGGGGGggGCGucgggacucgcGGAGg -3'
miRNA:   3'- cuuaCCuuCCGCUCCCCUa-CGU-----------CCUC- -5'
5282 3' -55.7 NC_001798.1 + 146349 0.69 0.775145
Target:  5'- aGAGaGGggGGgGGGGGGAga-GGGAa -3'
miRNA:   3'- -CUUaCCuuCCgCUCCCCUacgUCCUc -5'
5282 3' -55.7 NC_001798.1 + 31015 0.69 0.756042
Target:  5'- gGGcgGGGgucGGGCGGGGGucggGCGGGGGu -3'
miRNA:   3'- -CUuaCCU---UCCGCUCCCcua-CGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 30982 0.69 0.756042
Target:  5'- gGGcgGGGgucGGGCGGGGGucggGCGGGGGu -3'
miRNA:   3'- -CUuaCCU---UCCGCUCCCcua-CGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 27234 0.69 0.746319
Target:  5'- ---gGGGAGGCGgccgcGGGGGAggcggccGCGGGAc -3'
miRNA:   3'- cuuaCCUUCCGC-----UCCCCUa------CGUCCUc -5'
5282 3' -55.7 NC_001798.1 + 59659 0.69 0.745341
Target:  5'- cGGAgagGGggGGCGAcucggcucgcgugGGGGcgGCGGGc- -3'
miRNA:   3'- -CUUa--CCuuCCGCU-------------CCCCuaCGUCCuc -5'
5282 3' -55.7 NC_001798.1 + 146301 0.7 0.736494
Target:  5'- gGAGUGGgcGGcCGGGcGGGAggaugGCGGaGAGa -3'
miRNA:   3'- -CUUACCuuCC-GCUC-CCCUa----CGUC-CUC- -5'
5282 3' -55.7 NC_001798.1 + 36695 0.7 0.726576
Target:  5'- -uGUGcGcAGGgGAGGGGAggacGCGGGGGa -3'
miRNA:   3'- cuUAC-CuUCCgCUCCCCUa---CGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 2534 0.7 0.726576
Target:  5'- ---cGGcGGGGCGGGGGGcgcggcccccGCGGGAGg -3'
miRNA:   3'- cuuaCC-UUCCGCUCCCCua--------CGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 33398 0.7 0.726576
Target:  5'- gGAGUgGGAGGGCGccuggcucGGGGAgGgAGGAGg -3'
miRNA:   3'- -CUUA-CCUUCCGCu-------CCCCUaCgUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 35115 0.7 0.726576
Target:  5'- aGAggGGGAGGUaggGAGGGGAg--AGGAGa -3'
miRNA:   3'- -CUuaCCUUCCG---CUCCCCUacgUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 101008 0.7 0.716574
Target:  5'- ---aGGAAGGCgcgGAGGGGG-GCGGGu- -3'
miRNA:   3'- cuuaCCUUCCG---CUCCCCUaCGUCCuc -5'
5282 3' -55.7 NC_001798.1 + 146038 0.7 0.710538
Target:  5'- cGGUGGggGGCGugguggugaacgaugGGGGGAacacggGgGGGAGg -3'
miRNA:   3'- cUUACCuuCCGC---------------UCCCCUa-----CgUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 63234 0.7 0.70751
Target:  5'- cGGUGGAcaugAGGCuGAGGGGAaagcuggcgucggggGCGGGGGc -3'
miRNA:   3'- cUUACCU----UCCG-CUCCCCUa--------------CGUCCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.