miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5282 3' -55.7 NC_001798.1 + 35845 1.09 0.002605
Target:  5'- aGAAUGGAAGGCGAGGGGAUGCAGGAGg -3'
miRNA:   3'- -CUUACCUUCCGCUCCCCUACGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 148039 0.78 0.285846
Target:  5'- -cGUGGGcgcGGGCGGGGGGGUGguGGuAGu -3'
miRNA:   3'- cuUACCU---UCCGCUCCCCUACguCC-UC- -5'
5282 3' -55.7 NC_001798.1 + 150084 0.77 0.328654
Target:  5'- --cUGGggGGCGAGGGGcgagcGCGGGGc -3'
miRNA:   3'- cuuACCuuCCGCUCCCCua---CGUCCUc -5'
5282 3' -55.7 NC_001798.1 + 27314 0.77 0.336233
Target:  5'- gGGAUGGAGGGgaggGAGGGGGUGgCGGGGa -3'
miRNA:   3'- -CUUACCUUCCg---CUCCCCUAC-GUCCUc -5'
5282 3' -55.7 NC_001798.1 + 21555 0.77 0.336233
Target:  5'- aGggUGGggGGgGGGGGGggGgAGGGa -3'
miRNA:   3'- -CuuACCuuCCgCUCCCCuaCgUCCUc -5'
5282 3' -55.7 NC_001798.1 + 30952 0.76 0.36781
Target:  5'- ---cGGggGGCGGGcGGGGgucggGCGGGGGu -3'
miRNA:   3'- cuuaCCuuCCGCUC-CCCUa----CGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 136130 0.76 0.376017
Target:  5'- --cUGGAAGGCGuguGGGGcgaggGCGGGAGc -3'
miRNA:   3'- cuuACCUUCCGCu--CCCCua---CGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 85827 0.75 0.410055
Target:  5'- ---gGGggGGCGGGGGcGG-GCGGGGGc -3'
miRNA:   3'- cuuaCCuuCCGCUCCC-CUaCGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 30021 0.75 0.436807
Target:  5'- ---gGGggGGCGAGGGag-GCAGGGa -3'
miRNA:   3'- cuuaCCuuCCGCUCCCcuaCGUCCUc -5'
5282 3' -55.7 NC_001798.1 + 15468 0.74 0.473032
Target:  5'- -cGUGGGuagacguGGGCGGGGGGGUcGUGGGGGc -3'
miRNA:   3'- cuUACCU-------UCCGCUCCCCUA-CGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 150197 0.74 0.473981
Target:  5'- -cGUGGggGGCGGcaccGGGGGUguuggugccGCGGGGGa -3'
miRNA:   3'- cuUACCuuCCGCU----CCCCUA---------CGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 6227 0.74 0.493154
Target:  5'- ---cGGggGGCcggccGGGGGGAcggGCGGGGGa -3'
miRNA:   3'- cuuaCCuuCCG-----CUCCCCUa--CGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 56178 0.74 0.493154
Target:  5'- ---gGGAcGGCGGGGGGGUGgGGuGGGg -3'
miRNA:   3'- cuuaCCUuCCGCUCCCCUACgUC-CUC- -5'
5282 3' -55.7 NC_001798.1 + 36277 0.74 0.50385
Target:  5'- gGggUGGgcGGCGGGGGGGggugccgugggugugGCGGcGGGg -3'
miRNA:   3'- -CuuACCuuCCGCUCCCCUa--------------CGUC-CUC- -5'
5282 3' -55.7 NC_001798.1 + 67178 0.73 0.512675
Target:  5'- -cAUGGAaagGGGgGAGGaGGggGCGGGGGg -3'
miRNA:   3'- cuUACCU---UCCgCUCC-CCuaCGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 32911 0.73 0.532507
Target:  5'- ---gGGGAGGUGGGGGGGgggaaaGaCGGGAGg -3'
miRNA:   3'- cuuaCCUUCCGCUCCCCUa-----C-GUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 113753 0.73 0.542526
Target:  5'- ---gGGGuguGGCGGGGGGGUauuaagGCAGGGGc -3'
miRNA:   3'- cuuaCCUu--CCGCUCCCCUA------CGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 34630 0.73 0.542526
Target:  5'- cGGcgGGggGGgGGGGGGGaaaUGUgAGGAGa -3'
miRNA:   3'- -CUuaCCuuCCgCUCCCCU---ACG-UCCUC- -5'
5282 3' -55.7 NC_001798.1 + 33145 0.73 0.552607
Target:  5'- ---aGGggGGCc-GGGGAUGgGGGGGa -3'
miRNA:   3'- cuuaCCuuCCGcuCCCCUACgUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 28191 0.73 0.552607
Target:  5'- ---aGcGAGGGCGGGGGGAagGCGccGGAGg -3'
miRNA:   3'- cuuaC-CUUCCGCUCCCCUa-CGU--CCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.