miRNA display CGI


Results 1 - 20 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5282 3' -55.7 NC_001798.1 + 72 0.67 0.869017
Target:  5'- gGGcgGcGgcGGCGGGcGGGcgGCAGGGc -3'
miRNA:   3'- -CUuaC-CuuCCGCUC-CCCuaCGUCCUc -5'
5282 3' -55.7 NC_001798.1 + 2534 0.7 0.726576
Target:  5'- ---cGGcGGGGCGGGGGGcgcggcccccGCGGGAGg -3'
miRNA:   3'- cuuaCC-UUCCGCUCCCCua--------CGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 5249 0.68 0.801898
Target:  5'- ---cGGGgcgcgcgGGGCGGGGGGAaaGgAGGAGg -3'
miRNA:   3'- cuuaCCU-------UCCGCUCCCCUa-CgUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 6227 0.74 0.493154
Target:  5'- ---cGGggGGCcggccGGGGGGAcggGCGGGGGa -3'
miRNA:   3'- cuuaCCuuCCG-----CUCCCCUa--CGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 6255 0.67 0.861429
Target:  5'- nGAcgGGGggacGGGcCGGGGGGAcggGcCGGGGGg -3'
miRNA:   3'- -CUuaCCU----UCC-GCUCCCCUa--C-GUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 6297 0.67 0.869017
Target:  5'- cGGggGGAcGGGcCGGGGGGAcggGcCGGGGGg -3'
miRNA:   3'- -CUuaCCU-UCC-GCUCCCCUa--C-GUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 6336 0.67 0.869017
Target:  5'- cGGggGGAcGGGcCGGGGGGAcggGcCGGGGGg -3'
miRNA:   3'- -CUuaCCU-UCC-GCUCCCCUa--C-GUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 6375 0.68 0.829035
Target:  5'- ---cGGggGGcCGGGGGGc--CGGGGGg -3'
miRNA:   3'- cuuaCCuuCC-GCUCCCCuacGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 6399 0.71 0.645026
Target:  5'- ---cGGggGGcCGGGGGGA--CGGGGGg -3'
miRNA:   3'- cuuaCCuuCC-GCUCCCCUacGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 6423 0.71 0.645026
Target:  5'- ---cGGggGGaCGGGGGGA--CGGGGGg -3'
miRNA:   3'- cuuaCCuuCC-GCUCCCCUacGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 6447 0.71 0.645026
Target:  5'- ---cGGggGGaCGGGGGGA--CGGGGGg -3'
miRNA:   3'- cuuaCCuuCC-GCUCCCCUacGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 6471 0.71 0.645026
Target:  5'- ---cGGggGGaCGGGGGGA--CGGGGGg -3'
miRNA:   3'- cuuaCCuuCC-GCUCCCCUacGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 6495 0.71 0.645026
Target:  5'- ---cGGggGGaCGGGGGGA--CGGGGGg -3'
miRNA:   3'- cuuaCCuuCC-GCUCCCCUacGUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 6527 0.72 0.593422
Target:  5'- ---cGGggGGaCGGGGGGAcggGcCGGGGGg -3'
miRNA:   3'- cuuaCCuuCC-GCUCCCCUa--C-GUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 6569 0.72 0.593422
Target:  5'- ---cGGggGGaCGGGGGGAcggGcCGGGGGg -3'
miRNA:   3'- cuuaCCuuCC-GCUCCCCUa--C-GUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 6611 0.72 0.593422
Target:  5'- ---cGGggGGaCGGGGGGAcggGcCGGGGGg -3'
miRNA:   3'- cuuaCCuuCC-GCUCCCCUa--C-GUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 8548 0.66 0.897146
Target:  5'- -cGUGGGucgcGGCGAGGGG-UGgGGGcGa -3'
miRNA:   3'- cuUACCUu---CCGCUCCCCuACgUCCuC- -5'
5282 3' -55.7 NC_001798.1 + 9671 0.68 0.802798
Target:  5'- ---cGGAGGGCGc-GGGAUGgGGGGc -3'
miRNA:   3'- cuuaCCUUCCGCucCCCUACgUCCUc -5'
5282 3' -55.7 NC_001798.1 + 10290 0.72 0.603715
Target:  5'- ---gGGggGGCGAcggGGGGAcGaCGGGGGg -3'
miRNA:   3'- cuuaCCuuCCGCU---CCCCUaC-GUCCUC- -5'
5282 3' -55.7 NC_001798.1 + 12030 0.66 0.897146
Target:  5'- cGGcgGGgcGGCGGGGGcAUGCGGu-- -3'
miRNA:   3'- -CUuaCCuuCCGCUCCCcUACGUCcuc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.