miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5285 3' -55.3 NC_001798.1 + 97393 0.66 0.919813
Target:  5'- --aCCUgacgaCGCCGCUGCUGCgGCgGCu -3'
miRNA:   3'- aaaGGAag---GCGGUGGUGAUGgUGgUG- -5'
5285 3' -55.3 NC_001798.1 + 2868 0.66 0.919813
Target:  5'- --gCCUcgCUGCCGCCG--GCCACgCGCa -3'
miRNA:   3'- aaaGGAa-GGCGGUGGUgaUGGUG-GUG- -5'
5285 3' -55.3 NC_001798.1 + 116298 0.66 0.919813
Target:  5'- --cCCUggaCCGCCACCgagACUGCCGgauugaCGCg -3'
miRNA:   3'- aaaGGAa--GGCGGUGG---UGAUGGUg-----GUG- -5'
5285 3' -55.3 NC_001798.1 + 25812 0.66 0.919813
Target:  5'- gUUCCUggggcugcuggCCGgCGCCuGCgACCGCCGCc -3'
miRNA:   3'- aAAGGAa----------GGCgGUGG-UGaUGGUGGUG- -5'
5285 3' -55.3 NC_001798.1 + 82411 0.66 0.919813
Target:  5'- --cCCUgccCCaGCCGCCcCUGCCccaGCCGCc -3'
miRNA:   3'- aaaGGAa--GG-CGGUGGuGAUGG---UGGUG- -5'
5285 3' -55.3 NC_001798.1 + 82441 0.66 0.919813
Target:  5'- --cCCUgccCCaGCCGCCcCUGCCccaGCCGCc -3'
miRNA:   3'- aaaGGAa--GG-CGGUGGuGAUGG---UGGUG- -5'
5285 3' -55.3 NC_001798.1 + 82471 0.66 0.919813
Target:  5'- --cCCUgccCCaGCCGCCcCUGCCccaGCCGCc -3'
miRNA:   3'- aaaGGAa--GG-CGGUGGuGAUGG---UGGUG- -5'
5285 3' -55.3 NC_001798.1 + 82501 0.66 0.919813
Target:  5'- --cCCUgccCCaGCCGCCcCUGCCccaGCCGCc -3'
miRNA:   3'- aaaGGAa--GG-CGGUGGuGAUGG---UGGUG- -5'
5285 3' -55.3 NC_001798.1 + 35727 0.66 0.913947
Target:  5'- -cUCUcUCCGCCAuccucCCGCccgGCCGcCCACu -3'
miRNA:   3'- aaAGGaAGGCGGU-----GGUGa--UGGU-GGUG- -5'
5285 3' -55.3 NC_001798.1 + 38498 0.66 0.913947
Target:  5'- --cCCggagucUCCGCC-CCAC--CCGCCGCg -3'
miRNA:   3'- aaaGGa-----AGGCGGuGGUGauGGUGGUG- -5'
5285 3' -55.3 NC_001798.1 + 77994 0.66 0.913947
Target:  5'- gUUCCacgCCGCCGCCGaaACCuacGCCGa -3'
miRNA:   3'- aAAGGaa-GGCGGUGGUgaUGG---UGGUg -5'
5285 3' -55.3 NC_001798.1 + 113233 0.66 0.913947
Target:  5'- --gUCUUCCGCC-CCAC-ACCcaGCCGg -3'
miRNA:   3'- aaaGGAAGGCGGuGGUGaUGG--UGGUg -5'
5285 3' -55.3 NC_001798.1 + 1335 0.66 0.911531
Target:  5'- -cUCCcgCCGCgGcCCGCgcagcuccgccggGCCGCCGCg -3'
miRNA:   3'- aaAGGaaGGCGgU-GGUGa------------UGGUGGUG- -5'
5285 3' -55.3 NC_001798.1 + 79975 0.66 0.910308
Target:  5'- --gCCgcgUCCGCCGCCGg-GCCcccgggggucccagcGCCACu -3'
miRNA:   3'- aaaGGa--AGGCGGUGGUgaUGG---------------UGGUG- -5'
5285 3' -55.3 NC_001798.1 + 120299 0.66 0.907834
Target:  5'- -gUCCUggCUGCUguuGCC-CUcgACCGCCACg -3'
miRNA:   3'- aaAGGAa-GGCGG---UGGuGA--UGGUGGUG- -5'
5285 3' -55.3 NC_001798.1 + 49018 0.66 0.907834
Target:  5'- --cCCagCCGCCccuCCGCUguacGCCACCGg -3'
miRNA:   3'- aaaGGaaGGCGGu--GGUGA----UGGUGGUg -5'
5285 3' -55.3 NC_001798.1 + 69805 0.66 0.907834
Target:  5'- --gCCUguugggCCGCC-CCACggaACgGCCGCg -3'
miRNA:   3'- aaaGGAa-----GGCGGuGGUGa--UGgUGGUG- -5'
5285 3' -55.3 NC_001798.1 + 147426 0.66 0.907834
Target:  5'- --cCCcgCCGCCGCCGCccuUugC-CCGCg -3'
miRNA:   3'- aaaGGaaGGCGGUGGUG---AugGuGGUG- -5'
5285 3' -55.3 NC_001798.1 + 137254 0.66 0.907834
Target:  5'- -aUCCccUCCGCCACCucgACCagACUGCg -3'
miRNA:   3'- aaAGGa-AGGCGGUGGugaUGG--UGGUG- -5'
5285 3' -55.3 NC_001798.1 + 122300 0.66 0.901475
Target:  5'- -gUCCUg-CGCCAUCACUACgggACCAa -3'
miRNA:   3'- aaAGGAagGCGGUGGUGAUGg--UGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.