miRNA display CGI


Results 41 - 60 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5285 5' -60 NC_001798.1 + 66839 0.67 0.748383
Target:  5'- gCCgGCGCCCAggcCGgGGUuuccGGGGAGucgccGGGGc -3'
miRNA:   3'- -GG-CGCGGGU---GCgCCAu---CUCCUU-----CCCC- -5'
5285 5' -60 NC_001798.1 + 78964 0.67 0.748383
Target:  5'- gCCGCGUCCGgGgGGgcGccuGGAagucccccgAGGGGu -3'
miRNA:   3'- -GGCGCGGGUgCgCCauCu--CCU---------UCCCC- -5'
5285 5' -60 NC_001798.1 + 150902 0.67 0.748383
Target:  5'- gCCGCcCCCGCGcCGGggcgcucuucgGGGGGcGGGcGGg -3'
miRNA:   3'- -GGCGcGGGUGC-GCCa----------UCUCCuUCC-CC- -5'
5285 5' -60 NC_001798.1 + 10684 0.67 0.748383
Target:  5'- gCGCcaCCCACGaCGGgcgcAGGGGAccgcaggcauccAGGGGu -3'
miRNA:   3'- gGCGc-GGGUGC-GCCa---UCUCCU------------UCCCC- -5'
5285 5' -60 NC_001798.1 + 153029 0.67 0.742828
Target:  5'- uCCGgGCCCGCGCGGcggcgcgcgguUGGccggcgccgcccccuGGGgcGGGcGg -3'
miRNA:   3'- -GGCgCGGGUGCGCC-----------AUC---------------UCCuuCCC-C- -5'
5285 5' -60 NC_001798.1 + 61153 0.67 0.739106
Target:  5'- -aGgGCUCGgG-GGaGGGGGAGGGGGg -3'
miRNA:   3'- ggCgCGGGUgCgCCaUCUCCUUCCCC- -5'
5285 5' -60 NC_001798.1 + 23885 0.67 0.739106
Target:  5'- -gGCGCCCGagGCGGaGGAGGcgcGGGc -3'
miRNA:   3'- ggCGCGGGUg-CGCCaUCUCCuu-CCCc -5'
5285 5' -60 NC_001798.1 + 67474 0.67 0.739106
Target:  5'- gCUGuCGCUaAUGCGGUAGgccgcGGGGccGGGGGg -3'
miRNA:   3'- -GGC-GCGGgUGCGCCAUC-----UCCU--UCCCC- -5'
5285 5' -60 NC_001798.1 + 79125 0.67 0.739106
Target:  5'- -gGCGCCgagCGCGCGGaggccgUGGAGGAGcuGGGc -3'
miRNA:   3'- ggCGCGG---GUGCGCC------AUCUCCUU--CCCc -5'
5285 5' -60 NC_001798.1 + 149163 0.67 0.739106
Target:  5'- -gGCGCCUcgGC-CGGUGGuccGGuGGGGGg -3'
miRNA:   3'- ggCGCGGG--UGcGCCAUCu--CCuUCCCC- -5'
5285 5' -60 NC_001798.1 + 3884 0.67 0.739106
Target:  5'- aCGCGCCC-CGgGGgcGGGGGGccggccccGGGc -3'
miRNA:   3'- gGCGCGGGuGCgCCauCUCCUU--------CCCc -5'
5285 5' -60 NC_001798.1 + 34791 0.67 0.739106
Target:  5'- aCGcCGCCgGCGCGGcccGGGGccccGGGGc -3'
miRNA:   3'- gGC-GCGGgUGCGCCau-CUCCuu--CCCC- -5'
5285 5' -60 NC_001798.1 + 104762 0.67 0.739106
Target:  5'- aCCGCGgCCagacGCGCcaGGUAGcgcGGAGGcGGGc -3'
miRNA:   3'- -GGCGCgGG----UGCG--CCAUCu--CCUUC-CCC- -5'
5285 5' -60 NC_001798.1 + 154045 0.67 0.739106
Target:  5'- gCGCGCCgggGCGCGGcacggcUGGAGcGccGGGGc -3'
miRNA:   3'- gGCGCGGg--UGCGCC------AUCUC-CuuCCCC- -5'
5285 5' -60 NC_001798.1 + 95924 0.67 0.729745
Target:  5'- gCGaGUCCugGgUGGguguguggGGAGGggGGGGu -3'
miRNA:   3'- gGCgCGGGugC-GCCa-------UCUCCuuCCCC- -5'
5285 5' -60 NC_001798.1 + 26500 0.67 0.71746
Target:  5'- gCCGCGCggggacggugcuggCCGCgGCGGgcggcggcgUGGAGGugguGGGGa -3'
miRNA:   3'- -GGCGCG--------------GGUG-CGCC---------AUCUCCuu--CCCC- -5'
5285 5' -60 NC_001798.1 + 9823 0.67 0.710798
Target:  5'- aCGUaCaCCACGCacaGGUAGAGGccggcgugcuGGGGGGa -3'
miRNA:   3'- gGCGcG-GGUGCG---CCAUCUCC----------UUCCCC- -5'
5285 5' -60 NC_001798.1 + 129289 0.67 0.710798
Target:  5'- uCgGCagGCaCCGCGCGGgcgcGGAGGAGGGc- -3'
miRNA:   3'- -GgCG--CG-GGUGCGCCa---UCUCCUUCCcc -5'
5285 5' -60 NC_001798.1 + 128946 0.67 0.710798
Target:  5'- uUCGCGCCCGgGCGcGUuccgggcccGGAGGAGGc-- -3'
miRNA:   3'- -GGCGCGGGUgCGC-CA---------UCUCCUUCccc -5'
5285 5' -60 NC_001798.1 + 111326 0.67 0.710798
Target:  5'- aCCGacgaGCCgCACGagcgcGGGGAAGGGGg -3'
miRNA:   3'- -GGCg---CGG-GUGCgccauCUCCUUCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.