miRNA display CGI


Results 1 - 20 of 163 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5285 5' -60 NC_001798.1 + 34012 1.12 0.001024
Target:  5'- cCCGCGCCCACGCGGUAGAGGAAGGGGa -3'
miRNA:   3'- -GGCGCGGGUGCGCCAUCUCCUUCCCC- -5'
5285 5' -60 NC_001798.1 + 27266 0.8 0.155395
Target:  5'- aCCGCaGCCC-CGUGGcgcgcgGGGGGGAGGGGc -3'
miRNA:   3'- -GGCG-CGGGuGCGCCa-----UCUCCUUCCCC- -5'
5285 5' -60 NC_001798.1 + 152510 0.79 0.179709
Target:  5'- gCGCGCCCcgGCGgGGgcGGAGGGAGGGa -3'
miRNA:   3'- gGCGCGGG--UGCgCCa-UCUCCUUCCCc -5'
5285 5' -60 NC_001798.1 + 137454 0.78 0.207339
Target:  5'- aCGCGCUCGCccggaaaucgGCGGggguuGGGGAGGGGGg -3'
miRNA:   3'- gGCGCGGGUG----------CGCCau---CUCCUUCCCC- -5'
5285 5' -60 NC_001798.1 + 85254 0.77 0.249814
Target:  5'- cCCGCGgCCGCGCGGggccgcgcgcGAGGcuucGGGGGGg -3'
miRNA:   3'- -GGCGCgGGUGCGCCau--------CUCC----UUCCCC- -5'
5285 5' -60 NC_001798.1 + 221 0.76 0.255602
Target:  5'- cCCGCGCCCgcccccGCGCGGc--AGGAcGGGGa -3'
miRNA:   3'- -GGCGCGGG------UGCGCCaucUCCUuCCCC- -5'
5285 5' -60 NC_001798.1 + 154559 0.76 0.255602
Target:  5'- cCCGCGCCCgcccccGCGCGGc--AGGAcGGGGa -3'
miRNA:   3'- -GGCGCGGG------UGCGCCaucUCCUuCCCC- -5'
5285 5' -60 NC_001798.1 + 97516 0.76 0.261499
Target:  5'- cCCGgGCCgC-CGCGGaGGAGGggGGGcGg -3'
miRNA:   3'- -GGCgCGG-GuGCGCCaUCUCCuuCCC-C- -5'
5285 5' -60 NC_001798.1 + 27525 0.76 0.267507
Target:  5'- cCCGCgggaaggcaGCCC-CGCGGcgcgcGGGGGGAGGGGc -3'
miRNA:   3'- -GGCG---------CGGGuGCGCCa----UCUCCUUCCCC- -5'
5285 5' -60 NC_001798.1 + 33408 0.76 0.273625
Target:  5'- -gGCGCCUggcuCGgGGagGGAGGAGGGGGg -3'
miRNA:   3'- ggCGCGGGu---GCgCCa-UCUCCUUCCCC- -5'
5285 5' -60 NC_001798.1 + 153785 0.76 0.279856
Target:  5'- cCCGCGCUCcuuGCGCGGcGGcGGcGGGGGg -3'
miRNA:   3'- -GGCGCGGG---UGCGCCaUCuCCuUCCCC- -5'
5285 5' -60 NC_001798.1 + 131358 0.75 0.299222
Target:  5'- uCgGCGCCCgGCGCGGccucGGGGGAuccccuGGGGg -3'
miRNA:   3'- -GgCGCGGG-UGCGCCa---UCUCCUu-----CCCC- -5'
5285 5' -60 NC_001798.1 + 27300 0.75 0.305904
Target:  5'- gCCGCgaGCUCG-GCGGgauggaggGGAGGGAGGGGg -3'
miRNA:   3'- -GGCG--CGGGUgCGCCa-------UCUCCUUCCCC- -5'
5285 5' -60 NC_001798.1 + 117689 0.74 0.33377
Target:  5'- gCgGCGUgUACGCGGgGGAcaaGGAGGGGGa -3'
miRNA:   3'- -GgCGCGgGUGCGCCaUCU---CCUUCCCC- -5'
5285 5' -60 NC_001798.1 + 34135 0.74 0.33377
Target:  5'- cCCGCGCCUGCcccccCGGgaacgacgacGGGGGggGGGGa -3'
miRNA:   3'- -GGCGCGGGUGc----GCCa---------UCUCCuuCCCC- -5'
5285 5' -60 NC_001798.1 + 21534 0.74 0.33377
Target:  5'- aUGgGUCCuCGCGGUacguacaggguGGGGGggGGGGg -3'
miRNA:   3'- gGCgCGGGuGCGCCA-----------UCUCCuuCCCC- -5'
5285 5' -60 NC_001798.1 + 32805 0.74 0.341021
Target:  5'- gCGaCGCCCcCGCGGgccacGGGGAguAGGGGg -3'
miRNA:   3'- gGC-GCGGGuGCGCCau---CUCCU--UCCCC- -5'
5285 5' -60 NC_001798.1 + 97459 0.74 0.353607
Target:  5'- gCGUGCUgGCGCGGcUGGGGGccggcggcgcgaccGGGGGGg -3'
miRNA:   3'- gGCGCGGgUGCGCC-AUCUCC--------------UUCCCC- -5'
5285 5' -60 NC_001798.1 + 100977 0.74 0.355862
Target:  5'- uCCGaC-CCCggggGCGUGGgcGGGGAGGGGGa -3'
miRNA:   3'- -GGC-GcGGG----UGCGCCauCUCCUUCCCC- -5'
5285 5' -60 NC_001798.1 + 113969 0.74 0.363451
Target:  5'- gUCGCGUCCGCcgGCGGU-GAGGcguugugcggGAGGGGc -3'
miRNA:   3'- -GGCGCGGGUG--CGCCAuCUCC----------UUCCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.