miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5285 5' -60 NC_001798.1 + 221 0.76 0.255602
Target:  5'- cCCGCGCCCgcccccGCGCGGc--AGGAcGGGGa -3'
miRNA:   3'- -GGCGCGGG------UGCGCCaucUCCUuCCCC- -5'
5285 5' -60 NC_001798.1 + 1967 0.66 0.810264
Target:  5'- gCGCGCCCAgCGCcg-AGAcGucGGGGg -3'
miRNA:   3'- gGCGCGGGU-GCGccaUCUcCuuCCCC- -5'
5285 5' -60 NC_001798.1 + 2075 0.69 0.613635
Target:  5'- gCCGCGCUCG-GCGGaccacuccGGggGGGGc -3'
miRNA:   3'- -GGCGCGGGUgCGCCaucu----CCuuCCCC- -5'
5285 5' -60 NC_001798.1 + 2548 0.71 0.517583
Target:  5'- gCGCgGCCCcCGCGGgAGGGGcggccgcggggcGGGGGGc -3'
miRNA:   3'- gGCG-CGGGuGCGCCaUCUCC------------UUCCCC- -5'
5285 5' -60 NC_001798.1 + 2585 0.7 0.536412
Target:  5'- -nGCGUCCGCGCGGcucuucuucGGGGGgcGcGGGg -3'
miRNA:   3'- ggCGCGGGUGCGCCa--------UCUCCuuC-CCC- -5'
5285 5' -60 NC_001798.1 + 3810 0.69 0.594131
Target:  5'- aCCGgGCCCGCGCcuccuccgccucGGgcgccccccAGAGGccGGGGc -3'
miRNA:   3'- -GGCgCGGGUGCG------------CCa--------UCUCCuuCCCC- -5'
5285 5' -60 NC_001798.1 + 3884 0.67 0.739106
Target:  5'- aCGCGCCC-CGgGGgcGGGGGGccggccccGGGc -3'
miRNA:   3'- gGCGCGGGuGCgCCauCUCCUU--------CCCc -5'
5285 5' -60 NC_001798.1 + 4372 0.7 0.545916
Target:  5'- gCGCGCCgGCgGCGGUGGuGGugguGGuGGu -3'
miRNA:   3'- gGCGCGGgUG-CGCCAUCuCCuu--CC-CC- -5'
5285 5' -60 NC_001798.1 + 4619 0.68 0.672234
Target:  5'- gCGCGCCguCGCGcucc-GGggGGGGc -3'
miRNA:   3'- gGCGCGGguGCGCcaucuCCuuCCCC- -5'
5285 5' -60 NC_001798.1 + 5031 0.66 0.810264
Target:  5'- aUCGCcUCCGacCGgGGUGugcGGGGggGGGGu -3'
miRNA:   3'- -GGCGcGGGU--GCgCCAU---CUCCuuCCCC- -5'
5285 5' -60 NC_001798.1 + 5756 0.68 0.652743
Target:  5'- cCCGCGCUC-CGCcccaaAGGGGgcGGGGc -3'
miRNA:   3'- -GGCGCGGGuGCGcca--UCUCCuuCCCC- -5'
5285 5' -60 NC_001798.1 + 5903 0.66 0.784477
Target:  5'- uCCGC-CCCGagGCGGgcccGGAcGGggGGcGGg -3'
miRNA:   3'- -GGCGcGGGUg-CGCCa---UCU-CCuuCC-CC- -5'
5285 5' -60 NC_001798.1 + 9083 0.66 0.801806
Target:  5'- -gGCGUCCACG-GcGUGGAGGGccacGGGa -3'
miRNA:   3'- ggCGCGGGUGCgC-CAUCUCCUu---CCCc -5'
5285 5' -60 NC_001798.1 + 9159 0.69 0.642971
Target:  5'- gCGcCGCCCGCGCcg-GGGGGcAGGGu -3'
miRNA:   3'- gGC-GCGGGUGCGccaUCUCCuUCCCc -5'
5285 5' -60 NC_001798.1 + 9659 0.71 0.489855
Target:  5'- gCGgGCCgCGCGCGGaGGgcgcGGGAuGGGGg -3'
miRNA:   3'- gGCgCGG-GUGCGCCaUC----UCCUuCCCC- -5'
5285 5' -60 NC_001798.1 + 9823 0.67 0.710798
Target:  5'- aCGUaCaCCACGCacaGGUAGAGGccggcgugcuGGGGGGa -3'
miRNA:   3'- gGCGcG-GGUGCG---CCAUCUCC----------UUCCCC- -5'
5285 5' -60 NC_001798.1 + 10684 0.67 0.748383
Target:  5'- gCGCcaCCCACGaCGGgcgcAGGGGAccgcaggcauccAGGGGu -3'
miRNA:   3'- gGCGc-GGGUGC-GCCa---UCUCCU------------UCCCC- -5'
5285 5' -60 NC_001798.1 + 10883 0.66 0.810264
Target:  5'- cCCGCGagCCAUGUucgGGUGGcAGGAGccgucggucGGGGc -3'
miRNA:   3'- -GGCGCg-GGUGCG---CCAUC-UCCUU---------CCCC- -5'
5285 5' -60 NC_001798.1 + 11649 0.68 0.691607
Target:  5'- cCUGUGUCCcCGgGGgcGGGGGucgggucucGGGGGg -3'
miRNA:   3'- -GGCGCGGGuGCgCCauCUCCU---------UCCCC- -5'
5285 5' -60 NC_001798.1 + 15178 0.67 0.710798
Target:  5'- gCCGCGauguUCGgGgGGUGGGGGGgcuggcgagccGGGGGg -3'
miRNA:   3'- -GGCGCg---GGUgCgCCAUCUCCU-----------UCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.