miRNA display CGI


Results 41 - 60 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5286 3' -60.9 NC_001798.1 + 105264 0.66 0.68934
Target:  5'- cGCGGCauCCGCCucuuCGGcCGCGG-CCGCCGc -3'
miRNA:   3'- -UGCCG--GGUGGu---GUU-GUGCCgGGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 26424 0.66 0.687378
Target:  5'- gACGcGCCCccgcuggugcugcGCgACGACGCggacgcgGGCCCGCCc -3'
miRNA:   3'- -UGC-CGGG-------------UGgUGUUGUG-------CCGGGUGGu -5'
5286 3' -60.9 NC_001798.1 + 23719 0.66 0.686395
Target:  5'- gGCGGCCCcgGCgGgucgagcuggacgcCGACGCGGCCU-CCGg -3'
miRNA:   3'- -UGCCGGG--UGgU--------------GUUGUGCCGGGuGGU- -5'
5286 3' -60.9 NC_001798.1 + 89099 0.66 0.683447
Target:  5'- uCGGCCCcCCACcuCGaucuccagguaguccCGGUCCGCCu -3'
miRNA:   3'- uGCCGGGuGGUGuuGU---------------GCCGGGUGGu -5'
5286 3' -60.9 NC_001798.1 + 1747 0.66 0.67951
Target:  5'- cGCGccGCCgGCCAgcGCACGGCgCACUg -3'
miRNA:   3'- -UGC--CGGgUGGUguUGUGCCGgGUGGu -5'
5286 3' -60.9 NC_001798.1 + 51180 0.66 0.67951
Target:  5'- -aGGCCCggGCgGCGGCGCcccCCCGCCGg -3'
miRNA:   3'- ugCCGGG--UGgUGUUGUGcc-GGGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 71996 0.66 0.67951
Target:  5'- -aGGgCCACgUGCAACGCuGCCUACCu -3'
miRNA:   3'- ugCCgGGUG-GUGUUGUGcCGGGUGGu -5'
5286 3' -60.9 NC_001798.1 + 87297 0.66 0.67951
Target:  5'- cUGGCCgacCGCCACAGCACccCCCuCCAg -3'
miRNA:   3'- uGCCGG---GUGGUGUUGUGccGGGuGGU- -5'
5286 3' -60.9 NC_001798.1 + 9032 0.66 0.67951
Target:  5'- cACcGCCCcCCGCAgccagcGCACGGCgaGCCAg -3'
miRNA:   3'- -UGcCGGGuGGUGU------UGUGCCGggUGGU- -5'
5286 3' -60.9 NC_001798.1 + 45176 0.66 0.67951
Target:  5'- -gGGCuCCACCAuCGACGgGGCCgUugCGg -3'
miRNA:   3'- ugCCG-GGUGGU-GUUGUgCCGG-GugGU- -5'
5286 3' -60.9 NC_001798.1 + 53324 0.66 0.67951
Target:  5'- gGCGGCgcggCACCAUAACACcGUCC-CCGa -3'
miRNA:   3'- -UGCCGg---GUGGUGUUGUGcCGGGuGGU- -5'
5286 3' -60.9 NC_001798.1 + 92499 0.66 0.67951
Target:  5'- cACGGCggCCGCCACc---UGGCCC-CCAg -3'
miRNA:   3'- -UGCCG--GGUGGUGuuguGCCGGGuGGU- -5'
5286 3' -60.9 NC_001798.1 + 153032 0.66 0.67951
Target:  5'- -gGGCCCGCgCgGCGgcGCGCGGUUgGCCGg -3'
miRNA:   3'- ugCCGGGUG-G-UGU--UGUGCCGGgUGGU- -5'
5286 3' -60.9 NC_001798.1 + 24569 0.66 0.67951
Target:  5'- gGCGGCCgGCgCGCGGagGCGGgCCGCg- -3'
miRNA:   3'- -UGCCGGgUG-GUGUUg-UGCCgGGUGgu -5'
5286 3' -60.9 NC_001798.1 + 4052 0.66 0.67951
Target:  5'- -gGGCCCgGCgGCGcuccAgGCGGCCCGCg- -3'
miRNA:   3'- ugCCGGG-UGgUGU----UgUGCCGGGUGgu -5'
5286 3' -60.9 NC_001798.1 + 114093 0.66 0.67951
Target:  5'- cCGGUaCGCCGCGGCcaucCuGCCCACCGg -3'
miRNA:   3'- uGCCGgGUGGUGUUGu---GcCGGGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 93385 0.66 0.67951
Target:  5'- gGCGGaCCCcaaggACCACAGCAa-GCCCuCCu -3'
miRNA:   3'- -UGCC-GGG-----UGGUGUUGUgcCGGGuGGu -5'
5286 3' -60.9 NC_001798.1 + 149985 0.66 0.678525
Target:  5'- cGCGGCgCCcgcggacGCCGgGGCgaGCGGCCCgugGCCGc -3'
miRNA:   3'- -UGCCG-GG-------UGGUgUUG--UGCCGGG---UGGU- -5'
5286 3' -60.9 NC_001798.1 + 32366 0.66 0.677539
Target:  5'- gGCGGCCCcgagcccggggcCCGCGACcCGGCgCCcgGCCu -3'
miRNA:   3'- -UGCCGGGu-----------GGUGUUGuGCCG-GG--UGGu -5'
5286 3' -60.9 NC_001798.1 + 7890 0.66 0.676553
Target:  5'- gACGGCCgccaugaauuuuauCGCCGCGGC-UGcGCCCugCGu -3'
miRNA:   3'- -UGCCGG--------------GUGGUGUUGuGC-CGGGugGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.