miRNA display CGI


Results 21 - 40 of 319 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5286 3' -60.9 NC_001798.1 + 22964 0.66 0.705945
Target:  5'- gGCGGCCCcggcguccggggagGCCGuCGACGa-GCCUGCCGc -3'
miRNA:   3'- -UGCCGGG--------------UGGU-GUUGUgcCGGGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 126894 0.66 0.703026
Target:  5'- gACGGCCCuccACCACugcuucacagaccuGGCGCGcGCCgugguguuccugaaCACCAg -3'
miRNA:   3'- -UGCCGGG---UGGUG--------------UUGUGC-CGG--------------GUGGU- -5'
5286 3' -60.9 NC_001798.1 + 99497 0.66 0.699126
Target:  5'- cGCGaCCuCACCACGAa--GGCCCggGCCAc -3'
miRNA:   3'- -UGCcGG-GUGGUGUUgugCCGGG--UGGU- -5'
5286 3' -60.9 NC_001798.1 + 23595 0.66 0.699126
Target:  5'- cCGaGCCCGCC-CAGgGcCGaGCCCGCCn -3'
miRNA:   3'- uGC-CGGGUGGuGUUgU-GC-CGGGUGGu -5'
5286 3' -60.9 NC_001798.1 + 1700 0.66 0.699126
Target:  5'- cCGGCCCGa-AC-ACGCGGCCggagGCCAg -3'
miRNA:   3'- uGCCGGGUggUGuUGUGCCGGg---UGGU- -5'
5286 3' -60.9 NC_001798.1 + 102903 0.66 0.699126
Target:  5'- cCGGCCUGCCGCcGCcgcuCGGCCaCAaggcuCCAg -3'
miRNA:   3'- uGCCGGGUGGUGuUGu---GCCGG-GU-----GGU- -5'
5286 3' -60.9 NC_001798.1 + 32027 0.66 0.699126
Target:  5'- uCGGgCgACCGCGGcCACGGgCCGCUc -3'
miRNA:   3'- uGCCgGgUGGUGUU-GUGCCgGGUGGu -5'
5286 3' -60.9 NC_001798.1 + 22361 0.66 0.699126
Target:  5'- -gGGgCCGCgCAUAAUGCGGuUCCACCu -3'
miRNA:   3'- ugCCgGGUG-GUGUUGUGCC-GGGUGGu -5'
5286 3' -60.9 NC_001798.1 + 79702 0.66 0.69815
Target:  5'- uGCGGCCC-CCGCuuccGACGgacguccucgaauCGGCCCcgacggucacgGCCAu -3'
miRNA:   3'- -UGCCGGGuGGUG----UUGU-------------GCCGGG-----------UGGU- -5'
5286 3' -60.9 NC_001798.1 + 94988 0.66 0.69815
Target:  5'- gGCGGCggCCGCCugggccccgcaggGCGGCGCGGgCCUggagGCCGg -3'
miRNA:   3'- -UGCCG--GGUGG-------------UGUUGUGCC-GGG----UGGU- -5'
5286 3' -60.9 NC_001798.1 + 152422 0.66 0.68934
Target:  5'- uGCGGCCCgACCGucACACGgGgCUGCCu -3'
miRNA:   3'- -UGCCGGG-UGGUguUGUGC-CgGGUGGu -5'
5286 3' -60.9 NC_001798.1 + 22319 0.66 0.68934
Target:  5'- aACGGgCCGCCGCcacgGACGCGGaCgCGCgGg -3'
miRNA:   3'- -UGCCgGGUGGUG----UUGUGCC-GgGUGgU- -5'
5286 3' -60.9 NC_001798.1 + 26201 0.66 0.68934
Target:  5'- cCGGgCCGCCGCcucgGGCGCGGgCgaCGCCAu -3'
miRNA:   3'- uGCCgGGUGGUG----UUGUGCCgG--GUGGU- -5'
5286 3' -60.9 NC_001798.1 + 26303 0.66 0.68934
Target:  5'- -gGGCgCGCCGCu--GCGGCCCGuCUAc -3'
miRNA:   3'- ugCCGgGUGGUGuugUGCCGGGU-GGU- -5'
5286 3' -60.9 NC_001798.1 + 47659 0.66 0.68934
Target:  5'- gACGacuUCCGCCGCGGCGCuGGCCCGa-- -3'
miRNA:   3'- -UGCc--GGGUGGUGUUGUG-CCGGGUggu -5'
5286 3' -60.9 NC_001798.1 + 52600 0.66 0.68934
Target:  5'- gUGGCCCugGCCGCGuuugACggcgggucgACGGCCC-CCGa -3'
miRNA:   3'- uGCCGGG--UGGUGU----UG---------UGCCGGGuGGU- -5'
5286 3' -60.9 NC_001798.1 + 105079 0.66 0.68934
Target:  5'- gACGaaCCCGCgGCccCGCGGCCCGCg- -3'
miRNA:   3'- -UGCc-GGGUGgUGuuGUGCCGGGUGgu -5'
5286 3' -60.9 NC_001798.1 + 5331 0.66 0.68934
Target:  5'- --cGCCCccagguggaACCGCAuuauGCGCGGCcCCGCCc -3'
miRNA:   3'- ugcCGGG---------UGGUGU----UGUGCCG-GGUGGu -5'
5286 3' -60.9 NC_001798.1 + 51906 0.66 0.68934
Target:  5'- cGCGaGCCuCACgGCGuuGCGGCCCguggggGCCGc -3'
miRNA:   3'- -UGC-CGG-GUGgUGUugUGCCGGG------UGGU- -5'
5286 3' -60.9 NC_001798.1 + 133651 0.66 0.68934
Target:  5'- gAC-GCCCACCGCAucgacCACaGcGCCUGCCGg -3'
miRNA:   3'- -UGcCGGGUGGUGUu----GUG-C-CGGGUGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.