miRNA display CGI


Results 21 - 40 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5286 3' -60.9 NC_001798.1 + 4111 0.66 0.708859
Target:  5'- uCGGCCCugggcgggcucgGCCGgGGCGCcGCCC-CCGg -3'
miRNA:   3'- uGCCGGG------------UGGUgUUGUGcCGGGuGGU- -5'
5286 3' -60.9 NC_001798.1 + 4484 0.66 0.669643
Target:  5'- cCGGUCCGCgGacccaGCGGCCCGCg- -3'
miRNA:   3'- uGCCGGGUGgUguug-UGCCGGGUGgu -5'
5286 3' -60.9 NC_001798.1 + 5331 0.66 0.68934
Target:  5'- --cGCCCccagguggaACCGCAuuauGCGCGGCcCCGCCc -3'
miRNA:   3'- ugcCGGG---------UGGUGU----UGUGCCG-GGUGGu -5'
5286 3' -60.9 NC_001798.1 + 7890 0.66 0.676553
Target:  5'- gACGGCCgccaugaauuuuauCGCCGCGGC-UGcGCCCugCGu -3'
miRNA:   3'- -UGCCGG--------------GUGGUGUUGuGC-CGGGugGU- -5'
5286 3' -60.9 NC_001798.1 + 9032 0.66 0.67951
Target:  5'- cACcGCCCcCCGCAgccagcGCACGGCgaGCCAg -3'
miRNA:   3'- -UGcCGGGuGGUGU------UGUGCCGggUGGU- -5'
5286 3' -60.9 NC_001798.1 + 9136 0.68 0.570622
Target:  5'- gUGGUCUGCgGCAcgcggGCGCGGCgCCGCCc -3'
miRNA:   3'- uGCCGGGUGgUGU-----UGUGCCG-GGUGGu -5'
5286 3' -60.9 NC_001798.1 + 11193 0.7 0.448483
Target:  5'- -gGGCCUGCCGa---ACGGCCCGCUu -3'
miRNA:   3'- ugCCGGGUGGUguugUGCCGGGUGGu -5'
5286 3' -60.9 NC_001798.1 + 13655 0.74 0.273652
Target:  5'- cGCGGaguCCCACCGCGACAacuagcaGGgCCGCCGu -3'
miRNA:   3'- -UGCC---GGGUGGUGUUGUg------CCgGGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 16175 0.72 0.334828
Target:  5'- gGCGGCCCGCgGgGaccggggggacGCACGGgCCGCCc -3'
miRNA:   3'- -UGCCGGGUGgUgU-----------UGUGCCgGGUGGu -5'
5286 3' -60.9 NC_001798.1 + 18398 0.66 0.71853
Target:  5'- -aGGCCauuuGCCGCGucGCGCGuGCCaACCAa -3'
miRNA:   3'- ugCCGGg---UGGUGU--UGUGC-CGGgUGGU- -5'
5286 3' -60.9 NC_001798.1 + 20274 0.68 0.580447
Target:  5'- gGCGGCC--CCACGuGCGCGGCCCcaggcggguCCGg -3'
miRNA:   3'- -UGCCGGguGGUGU-UGUGCCGGGu--------GGU- -5'
5286 3' -60.9 NC_001798.1 + 20443 0.67 0.620029
Target:  5'- gGCGGCUCcgcuCCGCAuCugGGCCUggcgagcagagcGCCGg -3'
miRNA:   3'- -UGCCGGGu---GGUGUuGugCCGGG------------UGGU- -5'
5286 3' -60.9 NC_001798.1 + 21316 0.67 0.600194
Target:  5'- cCGGCCC-CC-CGGCccccCGGCCCcCCGg -3'
miRNA:   3'- uGCCGGGuGGuGUUGu---GCCGGGuGGU- -5'
5286 3' -60.9 NC_001798.1 + 21786 0.72 0.372909
Target:  5'- aACGGCCCGCCcccCGuccgGGCCCGCCu -3'
miRNA:   3'- -UGCCGGGUGGu--GUugugCCGGGUGGu -5'
5286 3' -60.9 NC_001798.1 + 22319 0.66 0.68934
Target:  5'- aACGGgCCGCCGCcacgGACGCGGaCgCGCgGg -3'
miRNA:   3'- -UGCCgGGUGGUG----UUGUGCC-GgGUGgU- -5'
5286 3' -60.9 NC_001798.1 + 22361 0.66 0.699126
Target:  5'- -gGGgCCGCgCAUAAUGCGGuUCCACCu -3'
miRNA:   3'- ugCCgGGUG-GUGUUGUGCC-GGGUGGu -5'
5286 3' -60.9 NC_001798.1 + 22520 0.66 0.71853
Target:  5'- cGCGGCUa--C-CGACGCGGCC-GCCAg -3'
miRNA:   3'- -UGCCGGgugGuGUUGUGCCGGgUGGU- -5'
5286 3' -60.9 NC_001798.1 + 22964 0.66 0.705945
Target:  5'- gGCGGCCCcggcguccggggagGCCGuCGACGa-GCCUGCCGc -3'
miRNA:   3'- -UGCCGGG--------------UGGU-GUUGUgcCGGGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 23007 0.71 0.388943
Target:  5'- gACGGCgucgucUCGCCGCGGCAgcUGGCCCugCu -3'
miRNA:   3'- -UGCCG------GGUGGUGUUGU--GCCGGGugGu -5'
5286 3' -60.9 NC_001798.1 + 23114 0.67 0.610104
Target:  5'- aGCGGCCCGCuCGCcuucuccgcCGCGGaCCCccuCCAu -3'
miRNA:   3'- -UGCCGGGUG-GUGuu-------GUGCC-GGGu--GGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.