miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5286 3' -60.9 NC_001798.1 + 363 0.69 0.53179
Target:  5'- --cGCCCGcCCGC-ACACGGuucCCCGCCAc -3'
miRNA:   3'- ugcCGGGU-GGUGuUGUGCC---GGGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 1190 0.77 0.175898
Target:  5'- cGCcGCCCGCCGCGgccagcaccguccccGCGCGGCCCGCg- -3'
miRNA:   3'- -UGcCGGGUGGUGU---------------UGUGCCGGGUGgu -5'
5286 3' -60.9 NC_001798.1 + 1342 0.73 0.292991
Target:  5'- cGCGGCCCG-CGCAGCuccgcCGGgCCGCCGc -3'
miRNA:   3'- -UGCCGGGUgGUGUUGu----GCCgGGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 1401 0.66 0.71853
Target:  5'- gACGGgCCGCaGCGGCGCG-CCCAggccCCAg -3'
miRNA:   3'- -UGCCgGGUGgUGUUGUGCcGGGU----GGU- -5'
5286 3' -60.9 NC_001798.1 + 1515 0.66 0.708859
Target:  5'- gGCGGCCCggccguccagcGCCGgGAgCACGGCgCGgCGg -3'
miRNA:   3'- -UGCCGGG-----------UGGUgUU-GUGCCGgGUgGU- -5'
5286 3' -60.9 NC_001798.1 + 1700 0.66 0.699126
Target:  5'- cCGGCCCGa-AC-ACGCGGCCggagGCCAg -3'
miRNA:   3'- uGCCGGGUggUGuUGUGCCGGg---UGGU- -5'
5286 3' -60.9 NC_001798.1 + 1747 0.66 0.67951
Target:  5'- cGCGccGCCgGCCAgcGCACGGCgCACUg -3'
miRNA:   3'- -UGC--CGGgUGGUguUGUGCCGgGUGGu -5'
5286 3' -60.9 NC_001798.1 + 2049 0.66 0.669643
Target:  5'- -aGGgCCGCCagcagGCAGgACaGCCCGCCGc -3'
miRNA:   3'- ugCCgGGUGG-----UGUUgUGcCGGGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 2102 0.81 0.09524
Target:  5'- -gGGCCCGCCccCGGCGCGGCCCGCg- -3'
miRNA:   3'- ugCCGGGUGGu-GUUGUGCCGGGUGgu -5'
5286 3' -60.9 NC_001798.1 + 2549 0.69 0.522226
Target:  5'- cGCGGCCC-CCGCGGgAgGGgCgGCCGc -3'
miRNA:   3'- -UGCCGGGuGGUGUUgUgCCgGgUGGU- -5'
5286 3' -60.9 NC_001798.1 + 2799 0.68 0.560839
Target:  5'- -gGGCuCCGCgGCAGCGCcgGGCCCAgggccCCGg -3'
miRNA:   3'- ugCCG-GGUGgUGUUGUG--CCGGGU-----GGU- -5'
5286 3' -60.9 NC_001798.1 + 2864 0.69 0.53179
Target:  5'- gGCGGCCuCGCUGCcGC-CGGCCaCGCgCAg -3'
miRNA:   3'- -UGCCGG-GUGGUGuUGuGCCGG-GUG-GU- -5'
5286 3' -60.9 NC_001798.1 + 2973 0.67 0.610104
Target:  5'- uCGGCgUGCgGCGGgGCGGCCgGCCc -3'
miRNA:   3'- uGCCGgGUGgUGUUgUGCCGGgUGGu -5'
5286 3' -60.9 NC_001798.1 + 3035 0.73 0.292991
Target:  5'- cCGGCCaGCCcCGGCACGGCC-GCCAg -3'
miRNA:   3'- uGCCGGgUGGuGUUGUGCCGGgUGGU- -5'
5286 3' -60.9 NC_001798.1 + 3106 0.8 0.105513
Target:  5'- gGCGGCCaggcacuCCACGgccACGCGGCCCGCCu -3'
miRNA:   3'- -UGCCGGgu-----GGUGU---UGUGCCGGGUGGu -5'
5286 3' -60.9 NC_001798.1 + 3508 0.71 0.38087
Target:  5'- cACGGCggCCGCCACGuGCGCcaGGCCCcaGCCGa -3'
miRNA:   3'- -UGCCG--GGUGGUGU-UGUG--CCGGG--UGGU- -5'
5286 3' -60.9 NC_001798.1 + 3543 0.8 0.118011
Target:  5'- aGCGGCCCGCCGCcaugGcguaccccaggugggGCACGGCCCgcGCCAc -3'
miRNA:   3'- -UGCCGGGUGGUG----U---------------UGUGCCGGG--UGGU- -5'
5286 3' -60.9 NC_001798.1 + 3867 0.69 0.522226
Target:  5'- cCaGCCCGCCguACAGCACGcGCCCcgggggcgggggGCCGg -3'
miRNA:   3'- uGcCGGGUGG--UGUUGUGC-CGGG------------UGGU- -5'
5286 3' -60.9 NC_001798.1 + 4016 0.78 0.153974
Target:  5'- aGCGGCCCGugGCGuCGCGGCCgGCCAc -3'
miRNA:   3'- -UGCCGGGUggUGUuGUGCCGGgUGGU- -5'
5286 3' -60.9 NC_001798.1 + 4052 0.66 0.67951
Target:  5'- -gGGCCCgGCgGCGcuccAgGCGGCCCGCg- -3'
miRNA:   3'- ugCCGGG-UGgUGU----UgUGCCGGGUGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.