miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5286 3' -60.9 NC_001798.1 + 33859 1.07 0.001364
Target:  5'- cACGGCCCACCACAACACGGCCCACCAc -3'
miRNA:   3'- -UGCCGGGUGGUGUUGUGCCGGGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 121703 0.81 0.094996
Target:  5'- cGCGGCucccgCCGCCGCGACggaggcgGCGGCCCACCu -3'
miRNA:   3'- -UGCCG-----GGUGGUGUUG-------UGCCGGGUGGu -5'
5286 3' -60.9 NC_001798.1 + 2102 0.81 0.09524
Target:  5'- -gGGCCCGCCccCGGCGCGGCCCGCg- -3'
miRNA:   3'- ugCCGGGUGGu-GUUGUGCCGGGUGgu -5'
5286 3' -60.9 NC_001798.1 + 109554 0.81 0.100253
Target:  5'- cGCGGCCUAUgGCGcgguggccccgaGCGCGGCCCGCCu -3'
miRNA:   3'- -UGCCGGGUGgUGU------------UGUGCCGGGUGGu -5'
5286 3' -60.9 NC_001798.1 + 3106 0.8 0.105513
Target:  5'- gGCGGCCaggcacuCCACGgccACGCGGCCCGCCu -3'
miRNA:   3'- -UGCCGGgu-----GGUGU---UGUGCCGGGUGGu -5'
5286 3' -60.9 NC_001798.1 + 3543 0.8 0.118011
Target:  5'- aGCGGCCCGCCGCcaugGcguaccccaggugggGCACGGCCCgcGCCAc -3'
miRNA:   3'- -UGCCGGGUGGUG----U---------------UGUGCCGGG--UGGU- -5'
5286 3' -60.9 NC_001798.1 + 103374 0.79 0.119516
Target:  5'- aACGGCCCccgagggucguugACCACGGCGagcaccCGGCCCACCu -3'
miRNA:   3'- -UGCCGGG-------------UGGUGUUGU------GCCGGGUGGu -5'
5286 3' -60.9 NC_001798.1 + 58024 0.79 0.12925
Target:  5'- cCGGCUCGCCGCcaucCGCGGCCgCACCAg -3'
miRNA:   3'- uGCCGGGUGGUGuu--GUGCCGG-GUGGU- -5'
5286 3' -60.9 NC_001798.1 + 131068 0.79 0.132543
Target:  5'- cCGcGCCCACCGCGgcguACACGGCCgcCGCCAg -3'
miRNA:   3'- uGC-CGGGUGGUGU----UGUGCCGG--GUGGU- -5'
5286 3' -60.9 NC_001798.1 + 124282 0.78 0.146502
Target:  5'- gGCGaCCCGCCGCccgcgcauCACGGCCCACCu -3'
miRNA:   3'- -UGCcGGGUGGUGuu------GUGCCGGGUGGu -5'
5286 3' -60.9 NC_001798.1 + 4016 0.78 0.153974
Target:  5'- aGCGGCCCGugGCGuCGCGGCCgGCCAc -3'
miRNA:   3'- -UGCCGGGUggUGUuGUGCCGGgUGGU- -5'
5286 3' -60.9 NC_001798.1 + 58328 0.77 0.161789
Target:  5'- -aGGCCCGCCGCcGCGUGGCCC-CCGa -3'
miRNA:   3'- ugCCGGGUGGUGuUGUGCCGGGuGGU- -5'
5286 3' -60.9 NC_001798.1 + 135771 0.77 0.161789
Target:  5'- gGCGGCCgGCCGC----CGGCCCGCCGg -3'
miRNA:   3'- -UGCCGGgUGGUGuuguGCCGGGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 1190 0.77 0.175898
Target:  5'- cGCcGCCCGCCGCGgccagcaccguccccGCGCGGCCCGCg- -3'
miRNA:   3'- -UGcCGGGUGGUGU---------------UGUGCCGGGUGgu -5'
5286 3' -60.9 NC_001798.1 + 139069 0.77 0.178499
Target:  5'- cGCGGgCCACCACGugGCGGCgCCAguCCu -3'
miRNA:   3'- -UGCCgGGUGGUGUugUGCCG-GGU--GGu -5'
5286 3' -60.9 NC_001798.1 + 24694 0.77 0.187416
Target:  5'- cCGGCCCGCCGCGcccccGCGCccggGGCCCGCgGg -3'
miRNA:   3'- uGCCGGGUGGUGU-----UGUG----CCGGGUGgU- -5'
5286 3' -60.9 NC_001798.1 + 25462 0.76 0.196722
Target:  5'- gGCGcGCCCGCCGCcuu-CGGCCCGCUg -3'
miRNA:   3'- -UGC-CGGGUGGUGuuguGCCGGGUGGu -5'
5286 3' -60.9 NC_001798.1 + 109434 0.75 0.232523
Target:  5'- gGCGGCCCGCCuGCGGCuggaGGCgCGCCu -3'
miRNA:   3'- -UGCCGGGUGG-UGUUGug--CCGgGUGGu -5'
5286 3' -60.9 NC_001798.1 + 68226 0.75 0.243714
Target:  5'- -aGGCCCGCCACcccgcCGCGcGCCaCACCAc -3'
miRNA:   3'- ugCCGGGUGGUGuu---GUGC-CGG-GUGGU- -5'
5286 3' -60.9 NC_001798.1 + 77272 0.75 0.243714
Target:  5'- cGCGGCCgC-CCGCGACcCGGCCuCGCCc -3'
miRNA:   3'- -UGCCGG-GuGGUGUUGuGCCGG-GUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.