miRNA display CGI


Results 21 - 40 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5286 3' -60.9 NC_001798.1 + 68226 0.75 0.243714
Target:  5'- -aGGCCCGCCACcccgcCGCGcGCCaCACCAc -3'
miRNA:   3'- ugCCGGGUGGUGuu---GUGC-CGG-GUGGU- -5'
5286 3' -60.9 NC_001798.1 + 122015 0.75 0.249476
Target:  5'- -gGGCuCCGCCAgGGCGCccuGGUCCACCAg -3'
miRNA:   3'- ugCCG-GGUGGUgUUGUG---CCGGGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 81536 0.75 0.249476
Target:  5'- cGCGGCCCAUCgggccgGCAGCuACGGCUCGCgAa -3'
miRNA:   3'- -UGCCGGGUGG------UGUUG-UGCCGGGUGgU- -5'
5286 3' -60.9 NC_001798.1 + 39103 0.74 0.25535
Target:  5'- cAUGGCCUugGCUGuCGACGCGGCCCGCgGg -3'
miRNA:   3'- -UGCCGGG--UGGU-GUUGUGCCGGGUGgU- -5'
5286 3' -60.9 NC_001798.1 + 109290 0.74 0.261336
Target:  5'- cGCGGCCCAcgcCCACGACGCGaUUCGCCu -3'
miRNA:   3'- -UGCCGGGU---GGUGUUGUGCcGGGUGGu -5'
5286 3' -60.9 NC_001798.1 + 98594 0.74 0.267437
Target:  5'- gGCGGCCC-CgGCGGCcccgGCGGCCCcCCGc -3'
miRNA:   3'- -UGCCGGGuGgUGUUG----UGCCGGGuGGU- -5'
5286 3' -60.9 NC_001798.1 + 53660 0.74 0.267437
Target:  5'- gGCGGggUugCGCGACGCGGCCCACa- -3'
miRNA:   3'- -UGCCggGugGUGUUGUGCCGGGUGgu -5'
5286 3' -60.9 NC_001798.1 + 13655 0.74 0.273652
Target:  5'- cGCGGaguCCCACCGCGACAacuagcaGGgCCGCCGu -3'
miRNA:   3'- -UGCC---GGGUGGUGUUGUg------CCgGGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 54375 0.74 0.273652
Target:  5'- cCGGCCCACCggggggccGCGGCGCGGUCgGCgGg -3'
miRNA:   3'- uGCCGGGUGG--------UGUUGUGCCGGgUGgU- -5'
5286 3' -60.9 NC_001798.1 + 116374 0.74 0.273652
Target:  5'- gACGGCCgacuuuaACCGCAACgACGGCCgGCUg -3'
miRNA:   3'- -UGCCGGg------UGGUGUUG-UGCCGGgUGGu -5'
5286 3' -60.9 NC_001798.1 + 25233 0.74 0.284483
Target:  5'- cCGGCCCGCCgagggccccgacccGCAGgGCGGCuggcgCCGCCAg -3'
miRNA:   3'- uGCCGGGUGG--------------UGUUgUGCCG-----GGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 82178 0.74 0.286429
Target:  5'- cGCGGUuuCCGCCGCAGCgGCGGCagugCCGCCu -3'
miRNA:   3'- -UGCCG--GGUGGUGUUG-UGCCG----GGUGGu -5'
5286 3' -60.9 NC_001798.1 + 97622 0.74 0.286429
Target:  5'- -gGGCgaCAUCGCGACGCGGgCCGCCGc -3'
miRNA:   3'- ugCCGg-GUGGUGUUGUGCCgGGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 125725 0.74 0.28904
Target:  5'- gGCGGCgagaugagccgagaCGCCGCcACGCGGCCCugCGc -3'
miRNA:   3'- -UGCCGg-------------GUGGUGuUGUGCCGGGugGU- -5'
5286 3' -60.9 NC_001798.1 + 87474 0.73 0.292991
Target:  5'- uCGGCCCACCuGCAcuAC-CGGCUCAUCGa -3'
miRNA:   3'- uGCCGGGUGG-UGU--UGuGCCGGGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 3035 0.73 0.292991
Target:  5'- cCGGCCaGCCcCGGCACGGCC-GCCAg -3'
miRNA:   3'- uGCCGGgUGGuGUUGUGCCGGgUGGU- -5'
5286 3' -60.9 NC_001798.1 + 1342 0.73 0.292991
Target:  5'- cGCGGCCCG-CGCAGCuccgcCGGgCCGCCGc -3'
miRNA:   3'- -UGCCGGGUgGUGUUGu----GCCgGGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 116428 0.73 0.292991
Target:  5'- cGCGGCcgacgCCGCCgACGAC-CGGCCgCACCGg -3'
miRNA:   3'- -UGCCG-----GGUGG-UGUUGuGCCGG-GUGGU- -5'
5286 3' -60.9 NC_001798.1 + 154085 0.73 0.292991
Target:  5'- cACGGCUggagCGCCGgGGCGCGGCCggCGCCGg -3'
miRNA:   3'- -UGCCGG----GUGGUgUUGUGCCGG--GUGGU- -5'
5286 3' -60.9 NC_001798.1 + 69067 0.73 0.299671
Target:  5'- -aGGCCCGCgcgcgCGCAGCcgcucuCGGCCCGCCc -3'
miRNA:   3'- ugCCGGGUG-----GUGUUGu-----GCCGGGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.