miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5286 3' -60.9 NC_001798.1 + 154085 0.73 0.292991
Target:  5'- cACGGCUggagCGCCGgGGCGCGGCCggCGCCGg -3'
miRNA:   3'- -UGCCGG----GUGGUgUUGUGCCGG--GUGGU- -5'
5286 3' -60.9 NC_001798.1 + 153372 0.68 0.560839
Target:  5'- uCGG-CCGCCGCcACGCGGCgCCggaACCGg -3'
miRNA:   3'- uGCCgGGUGGUGuUGUGCCG-GG---UGGU- -5'
5286 3' -60.9 NC_001798.1 + 153226 0.69 0.493954
Target:  5'- gACGGCCCGggcCCGCGGCGgCGGaggaCCCGCg- -3'
miRNA:   3'- -UGCCGGGU---GGUGUUGU-GCC----GGGUGgu -5'
5286 3' -60.9 NC_001798.1 + 153032 0.66 0.67951
Target:  5'- -gGGCCCGCgCgGCGgcGCGCGGUUgGCCGg -3'
miRNA:   3'- ugCCGGGUG-G-UGU--UGUGCCGGgUGGU- -5'
5286 3' -60.9 NC_001798.1 + 152642 0.68 0.580447
Target:  5'- cCGGCgCC-CCGcCGGCGCGGCCCugagugguGCCc -3'
miRNA:   3'- uGCCG-GGuGGU-GUUGUGCCGGG--------UGGu -5'
5286 3' -60.9 NC_001798.1 + 152422 0.66 0.68934
Target:  5'- uGCGGCCCgACCGucACACGgGgCUGCCu -3'
miRNA:   3'- -UGCCGGG-UGGUguUGUGC-CgGGUGGu -5'
5286 3' -60.9 NC_001798.1 + 151273 0.67 0.6399
Target:  5'- cCGGCCCG-CACGGCcgccuCGGCCU-CCAc -3'
miRNA:   3'- uGCCGGGUgGUGUUGu----GCCGGGuGGU- -5'
5286 3' -60.9 NC_001798.1 + 150797 0.66 0.659747
Target:  5'- ---cCCCGcCCGCAACGgGGCgCCGCCGc -3'
miRNA:   3'- ugccGGGU-GGUGUUGUgCCG-GGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 150562 0.67 0.620029
Target:  5'- aGCGGCCCGgggcCCGCGGgGCGGCgCGg-- -3'
miRNA:   3'- -UGCCGGGU----GGUGUUgUGCCGgGUggu -5'
5286 3' -60.9 NC_001798.1 + 150462 0.68 0.551102
Target:  5'- gACGGCCgCGCgGgGgcGCGCGGCgCGCCc -3'
miRNA:   3'- -UGCCGG-GUGgUgU--UGUGCCGgGUGGu -5'
5286 3' -60.9 NC_001798.1 + 150358 0.69 0.484685
Target:  5'- uGCGcGUCCACCggcacggcggGCGGCGCGGgCCCgGCCGc -3'
miRNA:   3'- -UGC-CGGGUGG----------UGUUGUGCC-GGG-UGGU- -5'
5286 3' -60.9 NC_001798.1 + 150047 0.71 0.405423
Target:  5'- -gGGCCCGgCGCGGCGCcgcccucuuGGCCC-CCAc -3'
miRNA:   3'- ugCCGGGUgGUGUUGUG---------CCGGGuGGU- -5'
5286 3' -60.9 NC_001798.1 + 149985 0.66 0.678525
Target:  5'- cGCGGCgCCcgcggacGCCGgGGCgaGCGGCCCgugGCCGc -3'
miRNA:   3'- -UGCCG-GG-------UGGUgUUG--UGCCGGG---UGGU- -5'
5286 3' -60.9 NC_001798.1 + 149463 0.73 0.309219
Target:  5'- gGCGGCuCCAcgcgggggccgcggcCCGCAGCA-GGUCCGCCAc -3'
miRNA:   3'- -UGCCG-GGU---------------GGUGUUGUgCCGGGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 149324 0.69 0.522226
Target:  5'- aGCGcGCCCACCAgggugcccugguCAaagaGCAUGuuGCCCACCGg -3'
miRNA:   3'- -UGC-CGGGUGGU------------GU----UGUGC--CGGGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 146634 0.67 0.6399
Target:  5'- -aGGCCC-CCGCgGGCauccgGCGGCCgGCCc -3'
miRNA:   3'- ugCCGGGuGGUG-UUG-----UGCCGGgUGGu -5'
5286 3' -60.9 NC_001798.1 + 146593 0.72 0.372909
Target:  5'- gACGGgCCGCgGCGccaGCGGCCCACg- -3'
miRNA:   3'- -UGCCgGGUGgUGUug-UGCCGGGUGgu -5'
5286 3' -60.9 NC_001798.1 + 145733 0.68 0.541418
Target:  5'- cCGGCCCgcgccccgccGCCACAccCACGGCacccccccCCGCCGc -3'
miRNA:   3'- uGCCGGG----------UGGUGUu-GUGCCG--------GGUGGU- -5'
5286 3' -60.9 NC_001798.1 + 144283 0.67 0.6399
Target:  5'- aAC-GCgCGCCGaAACGCGGCCCAguCCAg -3'
miRNA:   3'- -UGcCGgGUGGUgUUGUGCCGGGU--GGU- -5'
5286 3' -60.9 NC_001798.1 + 143812 0.68 0.590306
Target:  5'- -aGGCCCggGCgGC-GCGCGGCCaGCCGu -3'
miRNA:   3'- ugCCGGG--UGgUGuUGUGCCGGgUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.