Results 41 - 60 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5287 | 3' | -58.1 | NC_001798.1 | + | 33336 | 0.68 | 0.676648 |
Target: 5'- aGGGGGGCCCGAu-CGUGCAGagcaCGCAc -3' miRNA: 3'- cUCCUCUGGGCUccGUACGUUg---GCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 2493 | 0.68 | 0.686726 |
Target: 5'- cGGGucAGcGCCgCGGGGCGcgGCGGCCGCGg -3' miRNA: 3'- cUCC--UC-UGG-GCUCCGUa-CGUUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 2219 | 0.68 | 0.696759 |
Target: 5'- cAGcGGGCCCGAGGCGcGCAGCgGg- -3' miRNA: 3'- cUCcUCUGGGCUCCGUaCGUUGgCgu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 84052 | 0.68 | 0.696759 |
Target: 5'- cGAGcuGcACCCGGGGCAUGCGcACaaaGCAg -3' miRNA: 3'- -CUCcuC-UGGGCUCCGUACGU-UGg--CGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 86426 | 0.68 | 0.706739 |
Target: 5'- cGAGGcGGAcCCCGAGGC--GCAGCC-CGg -3' miRNA: 3'- -CUCC-UCU-GGGCUCCGuaCGUUGGcGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 126588 | 0.68 | 0.706739 |
Target: 5'- -uGGAGAucCCCGGGGCccGCAGCUuCGg -3' miRNA: 3'- cuCCUCU--GGGCUCCGuaCGUUGGcGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 147237 | 0.68 | 0.706739 |
Target: 5'- cGGGGGcCCCGGGGCcccgGGCCGCGc -3' miRNA: 3'- cUCCUCuGGGCUCCGuacgUUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 146441 | 0.68 | 0.706739 |
Target: 5'- -cGGAGccCCCGGaGCccGCGGCCGCAg -3' miRNA: 3'- cuCCUCu-GGGCUcCGuaCGUUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 18255 | 0.68 | 0.716656 |
Target: 5'- -cGGGGGCCCGggggccAGGUAcGCAuccuCCGCGg -3' miRNA: 3'- cuCCUCUGGGC------UCCGUaCGUu---GGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 105194 | 0.68 | 0.716656 |
Target: 5'- cGGcGGGGCCCGcGGUggGCGACgGCGc -3' miRNA: 3'- cUC-CUCUGGGCuCCGuaCGUUGgCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 149967 | 0.68 | 0.716656 |
Target: 5'- -cGGAGACgCCGAcgggGGCGcgGCGcCCGCGg -3' miRNA: 3'- cuCCUCUG-GGCU----CCGUa-CGUuGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 34734 | 0.67 | 0.726502 |
Target: 5'- cGAGGgucGGGCCCGGGaGCGggGCGGCC-CGg -3' miRNA: 3'- -CUCC---UCUGGGCUC-CGUa-CGUUGGcGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 2097 | 0.67 | 0.726502 |
Target: 5'- gGGGGGGGCCCGcccccGGC--GCGGcCCGCGg -3' miRNA: 3'- -CUCCUCUGGGCu----CCGuaCGUU-GGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 74028 | 0.67 | 0.726502 |
Target: 5'- -uGGAGuACCCGGcGGCGcgcgGCGGCCuGCGu -3' miRNA: 3'- cuCCUC-UGGGCU-CCGUa---CGUUGG-CGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 16184 | 0.67 | 0.726502 |
Target: 5'- -cGGGGACCgGGGGgAcGCAcggGCCGCc -3' miRNA: 3'- cuCCUCUGGgCUCCgUaCGU---UGGCGu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 4899 | 0.67 | 0.736267 |
Target: 5'- -cGGAGAUCCGGGGCcgccgGuCGucuccGCCGCGg -3' miRNA: 3'- cuCCUCUGGGCUCCGua---C-GU-----UGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 147702 | 0.67 | 0.745943 |
Target: 5'- aGGGGGGGuCCCagaaaGGGCAggcagGuCAGCCGCAc -3' miRNA: 3'- -CUCCUCU-GGGc----UCCGUa----C-GUUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 10615 | 0.67 | 0.745943 |
Target: 5'- cGAGcGGuuCCGGGGCGcgcaUGCAcGCCGCAu -3' miRNA: 3'- -CUCcUCugGGCUCCGU----ACGU-UGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 116092 | 0.67 | 0.745943 |
Target: 5'- cGGGGGcGAccucCCCGAGGaGUGCAugGCCGUg -3' miRNA: 3'- -CUCCU-CU----GGGCUCCgUACGU--UGGCGu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 25808 | 0.67 | 0.749786 |
Target: 5'- -uGGAGuuCCUGGGGCugcuggccggcgccUGCGACCGCc -3' miRNA: 3'- cuCCUCu-GGGCUCCGu-------------ACGUUGGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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