Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5287 | 3' | -58.1 | NC_001798.1 | + | 46672 | 0.71 | 0.545263 |
Target: 5'- -cGuGGGGCCCGGGGCcgGauACCGCGg -3' miRNA: 3'- cuC-CUCUGGGCUCCGuaCguUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 151615 | 0.7 | 0.555202 |
Target: 5'- gGGGGccGGGCCgGGGGCGUG--GCCGCGu -3' miRNA: 3'- -CUCC--UCUGGgCUCCGUACguUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 13408 | 0.7 | 0.575232 |
Target: 5'- uGGGGGGCCUccgauGGGGCAUGUAGgaGCAc -3' miRNA: 3'- cUCCUCUGGG-----CUCCGUACGUUggCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 83864 | 0.7 | 0.58531 |
Target: 5'- -uGGcGGGCCCGAGGCG-GCGACCc-- -3' miRNA: 3'- cuCC-UCUGGGCUCCGUaCGUUGGcgu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 14952 | 0.7 | 0.605559 |
Target: 5'- uGGGGugugGGGCCCGAGGCAUGUccuuaGCGg -3' miRNA: 3'- -CUCC----UCUGGGCUCCGUACGuugg-CGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 100745 | 0.69 | 0.615717 |
Target: 5'- uGGGGGACuuGGGGCGcGCGGuCgGCAa -3' miRNA: 3'- cUCCUCUGggCUCCGUaCGUU-GgCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 134222 | 0.69 | 0.615717 |
Target: 5'- uGGGGGACCCGAcccuguggcgGGCGcUGUAugCGUg -3' miRNA: 3'- cUCCUCUGGGCU----------CCGU-ACGUugGCGu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 136605 | 0.69 | 0.615717 |
Target: 5'- gGGGGAcgGGCCCG-GGCAacUGCAA-CGCAg -3' miRNA: 3'- -CUCCU--CUGGGCuCCGU--ACGUUgGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 9119 | 0.69 | 0.625887 |
Target: 5'- gGGGGAGccGCCgCGAGGUGgucUGCGGCaCGCGg -3' miRNA: 3'- -CUCCUC--UGG-GCUCCGU---ACGUUG-GCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 23880 | 0.69 | 0.625887 |
Target: 5'- uGGGGGGcGCCCGAGGCGgaGgAGgCGCGg -3' miRNA: 3'- -CUCCUC-UGGGCUCCGUa-CgUUgGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 29980 | 0.69 | 0.625887 |
Target: 5'- cGGGGGACCCccguGGGcCGUGC-GCCGCc -3' miRNA: 3'- cUCCUCUGGGc---UCC-GUACGuUGGCGu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 150546 | 0.69 | 0.635044 |
Target: 5'- gGAGGAGacaaaggagagcgGCCCGGGGCccGCGggGCgGCGc -3' miRNA: 3'- -CUCCUC-------------UGGGCUCCGuaCGU--UGgCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 36110 | 0.69 | 0.636061 |
Target: 5'- gGGGGGGGCCC--GGC-UGCGucucGCCGCGa -3' miRNA: 3'- -CUCCUCUGGGcuCCGuACGU----UGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 94004 | 0.69 | 0.646233 |
Target: 5'- uGGGGAGGCUgGAGaCGauuaucgGCAACCGCGa -3' miRNA: 3'- -CUCCUCUGGgCUCcGUa------CGUUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 6004 | 0.69 | 0.646233 |
Target: 5'- -cGGAGACCgGGacGGCA-GCGGCgGCAu -3' miRNA: 3'- cuCCUCUGGgCU--CCGUaCGUUGgCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 32361 | 0.69 | 0.656393 |
Target: 5'- -cGGAGggcggccccgaGCCCGGGGCccGCGACCcgGCGc -3' miRNA: 3'- cuCCUC-----------UGGGCUCCGuaCGUUGG--CGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 96062 | 0.69 | 0.666535 |
Target: 5'- aGAGGGGAUgucaGGGGCccGCcGCCGCAu -3' miRNA: 3'- -CUCCUCUGgg--CUCCGuaCGuUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 46142 | 0.69 | 0.666535 |
Target: 5'- cAGGAGGCCCcuGGCAUugaGCGacgACCGCc -3' miRNA: 3'- cUCCUCUGGGcuCCGUA---CGU---UGGCGu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 77386 | 0.69 | 0.666535 |
Target: 5'- cGAGcucacGACCCuGGGGUcgGCGGCCGCc -3' miRNA: 3'- -CUCcu---CUGGG-CUCCGuaCGUUGGCGu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 35421 | 0.68 | 0.676648 |
Target: 5'- -cGGGGGCCUaaugcggcggGAGGCGUG-GGCCGCu -3' miRNA: 3'- cuCCUCUGGG----------CUCCGUACgUUGGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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