Results 21 - 40 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5287 | 3' | -58.1 | NC_001798.1 | + | 25808 | 0.67 | 0.749786 |
Target: 5'- -uGGAGuuCCUGGGGCugcuggccggcgccUGCGACCGCc -3' miRNA: 3'- cuCCUCu-GGGCUCCGu-------------ACGUUGGCGu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 27207 | 0.75 | 0.338035 |
Target: 5'- cGGGGGAagccCCCGGGGCGgggcgcgggggagGCGGCCGCGg -3' miRNA: 3'- cUCCUCU----GGGCUCCGUa------------CGUUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 27607 | 0.67 | 0.774343 |
Target: 5'- aAGGGGGCgCgCGGGGC-UGCccuGCCGCc -3' miRNA: 3'- cUCCUCUG-G-GCUCCGuACGu--UGGCGu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 28199 | 0.67 | 0.75552 |
Target: 5'- cGGGGGGaaggcGCCgGAGGCcccGCAcGCCGCGc -3' miRNA: 3'- -CUCCUC-----UGGgCUCCGua-CGU-UGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 28776 | 0.66 | 0.801613 |
Target: 5'- gGAGGAGGag-GAGGCGgcgGCGGCgGCGc -3' miRNA: 3'- -CUCCUCUgggCUCCGUa--CGUUGgCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 29980 | 0.69 | 0.625887 |
Target: 5'- cGGGGGACCCccguGGGcCGUGC-GCCGCc -3' miRNA: 3'- cUCCUCUGGGc---UCC-GUACGuUGGCGu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 31811 | 0.66 | 0.78995 |
Target: 5'- gGAGGgaGGACCCGGGGUcccccgcgGCAccaacacccccgguGCCGCc -3' miRNA: 3'- -CUCC--UCUGGGCUCCGua------CGU--------------UGGCGu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 32361 | 0.69 | 0.656393 |
Target: 5'- -cGGAGggcggccccgaGCCCGGGGCccGCGACCcgGCGc -3' miRNA: 3'- cuCCUC-----------UGGGCUCCGuaCGUUGG--CGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 33336 | 0.68 | 0.676648 |
Target: 5'- aGGGGGGCCCGAu-CGUGCAGagcaCGCAc -3' miRNA: 3'- cUCCUCUGGGCUccGUACGUUg---GCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 33584 | 0.89 | 0.041134 |
Target: 5'- aGAGaAGACCCGAGGCAUGCAcCCGCAc -3' miRNA: 3'- -CUCcUCUGGGCUCCGUACGUuGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 33716 | 1.08 | 0.002002 |
Target: 5'- aGAGGAGACCCGAGGCAUGCAACCGCAc -3' miRNA: 3'- -CUCCUCUGGGCUCCGUACGUUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 34734 | 0.67 | 0.726502 |
Target: 5'- cGAGGgucGGGCCCGGGaGCGggGCGGCC-CGg -3' miRNA: 3'- -CUCC---UCUGGGCUC-CGUa-CGUUGGcGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 34835 | 0.66 | 0.792663 |
Target: 5'- -cGGGGGCCCG-GGCcgG--ACCGCc -3' miRNA: 3'- cuCCUCUGGGCuCCGuaCguUGGCGu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 35421 | 0.68 | 0.676648 |
Target: 5'- -cGGGGGCCUaaugcggcggGAGGCGUG-GGCCGCu -3' miRNA: 3'- cuCCUCUGGG----------CUCCGUACgUUGGCGu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 35574 | 0.72 | 0.477602 |
Target: 5'- -cGGAG-CCCGcGGCGcugcucggcUGCGGCCGCGg -3' miRNA: 3'- cuCCUCuGGGCuCCGU---------ACGUUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 36110 | 0.69 | 0.636061 |
Target: 5'- gGGGGGGGCCC--GGC-UGCGucucGCCGCGa -3' miRNA: 3'- -CUCCUCUGGGcuCCGuACGU----UGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 39472 | 0.75 | 0.318812 |
Target: 5'- aGGGGGGGCCUGGcGCGUGCcucguGGCCGCGg -3' miRNA: 3'- -CUCCUCUGGGCUcCGUACG-----UUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 39770 | 0.67 | 0.768746 |
Target: 5'- cGGGGGGAagccgaccgccugguCCCGAGGC--GCGACCaCAc -3' miRNA: 3'- -CUCCUCU---------------GGGCUCCGuaCGUUGGcGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 41658 | 0.66 | 0.78357 |
Target: 5'- gGAGGgagcGGACCgCGAgcauGGCGUGC--CCGCAu -3' miRNA: 3'- -CUCC----UCUGG-GCU----CCGUACGuuGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 43024 | 0.66 | 0.82752 |
Target: 5'- cGGGGGGAgcgcggggcCCCGGGcGCAaaUGCGGCgCGUg -3' miRNA: 3'- -CUCCUCU---------GGGCUC-CGU--ACGUUG-GCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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