Results 41 - 60 of 89 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5287 | 3' | -58.1 | NC_001798.1 | + | 45998 | 0.66 | 0.82752 |
Target: 5'- gGGGGGGAUCCaggggaGGGCGUGgGuccCCGCGa -3' miRNA: 3'- -CUCCUCUGGGc-----UCCGUACgUu--GGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 46142 | 0.69 | 0.666535 |
Target: 5'- cAGGAGGCCCcuGGCAUugaGCGacgACCGCc -3' miRNA: 3'- cUCCUCUGGGcuCCGUA---CGU---UGGCGu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 46672 | 0.71 | 0.545263 |
Target: 5'- -cGuGGGGCCCGGGGCcgGauACCGCGg -3' miRNA: 3'- cuC-CUCUGGGCUCCGuaCguUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 48369 | 0.73 | 0.405739 |
Target: 5'- -cGGGGccGCCCcgcGGGGCGUGCcGCCGCGa -3' miRNA: 3'- cuCCUC--UGGG---CUCCGUACGuUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 49772 | 0.71 | 0.525564 |
Target: 5'- cGGGGAGuuCCCgugGAGGCccgGCGACUGCGg -3' miRNA: 3'- -CUCCUCu-GGG---CUCCGua-CGUUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 60949 | 0.66 | 0.78995 |
Target: 5'- cGAGGcgcgucgugucaccGGGCCCgGAGGC--GCGGCCGUu -3' miRNA: 3'- -CUCC--------------UCUGGG-CUCCGuaCGUUGGCGu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 70331 | 0.67 | 0.76499 |
Target: 5'- -cGGAGGCgCG-GGCGUGCuggcacCCGCu -3' miRNA: 3'- cuCCUCUGgGCuCCGUACGuu----GGCGu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 74028 | 0.67 | 0.726502 |
Target: 5'- -uGGAGuACCCGGcGGCGcgcgGCGGCCuGCGu -3' miRNA: 3'- cuCCUC-UGGGCU-CCGUa---CGUUGG-CGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 77386 | 0.69 | 0.666535 |
Target: 5'- cGAGcucacGACCCuGGGGUcgGCGGCCGCc -3' miRNA: 3'- -CUCcu---CUGGG-CUCCGuaCGUUGGCGu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 79249 | 0.71 | 0.543282 |
Target: 5'- uGGGGGGCCUGcuGGCGgaguucgacgcgGCGGCCGCGg -3' miRNA: 3'- cUCCUCUGGGCu-CCGUa-----------CGUUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 79307 | 0.74 | 0.378139 |
Target: 5'- gGAGGAGuuCCGGGGCGcGCGggaacucauccaauACCGCAu -3' miRNA: 3'- -CUCCUCugGGCUCCGUaCGU--------------UGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 79535 | 0.78 | 0.203074 |
Target: 5'- -cGGAGACCCGGGGCcccUGguGCUGCGu -3' miRNA: 3'- cuCCUCUGGGCUCCGu--ACguUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 83864 | 0.7 | 0.58531 |
Target: 5'- -uGGcGGGCCCGAGGCG-GCGACCc-- -3' miRNA: 3'- cuCC-UCUGGGCUCCGUaCGUUGGcgu -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 84052 | 0.68 | 0.696759 |
Target: 5'- cGAGcuGcACCCGGGGCAUGCGcACaaaGCAg -3' miRNA: 3'- -CUCcuC-UGGGCUCCGUACGU-UGg--CGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 86426 | 0.68 | 0.706739 |
Target: 5'- cGAGGcGGAcCCCGAGGC--GCAGCC-CGg -3' miRNA: 3'- -CUCC-UCU-GGGCUCCGuaCGUUGGcGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 87154 | 0.66 | 0.82752 |
Target: 5'- -uGGGGAUCgGGGGC-UGCugccCCGCGu -3' miRNA: 3'- cuCCUCUGGgCUCCGuACGuu--GGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 94004 | 0.69 | 0.646233 |
Target: 5'- uGGGGAGGCUgGAGaCGauuaucgGCAACCGCGa -3' miRNA: 3'- -CUCCUCUGGgCUCcGUa------CGUUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 96062 | 0.69 | 0.666535 |
Target: 5'- aGAGGGGAUgucaGGGGCccGCcGCCGCAu -3' miRNA: 3'- -CUCCUCUGgg--CUCCGuaCGuUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 97612 | 0.66 | 0.822459 |
Target: 5'- -cGGAGAgCUGGGGCGacaucgcgacgcggGCcGCCGCGg -3' miRNA: 3'- cuCCUCUgGGCUCCGUa-------------CGuUGGCGU- -5' |
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5287 | 3' | -58.1 | NC_001798.1 | + | 99758 | 0.66 | 0.801613 |
Target: 5'- cGGGAuGCCCgcGAGGcCAU-CGACCGCAu -3' miRNA: 3'- cUCCUcUGGG--CUCC-GUAcGUUGGCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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