Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5290 | 3' | -53.4 | NC_001798.1 | + | 141557 | 0.66 | 0.970611 |
Target: 5'- gGGUGuucgcGUUCGCggaggagcugcGGCGgcGGCACGcGACg -3' miRNA: 3'- -CCACu----CAAGCGau---------CCGU--UCGUGC-CUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 45271 | 0.66 | 0.957851 |
Target: 5'- cGGUGGGggcCGC--GGaCAAGUcgGCGGACg -3' miRNA: 3'- -CCACUCaa-GCGauCC-GUUCG--UGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 47231 | 0.66 | 0.961523 |
Target: 5'- gGGUGGGcgugUCGUUGGGCGgcccccGGCcuuugcuuccucGCGGAa -3' miRNA: 3'- -CCACUCa---AGCGAUCCGU------UCG------------UGCCUg -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 154040 | 0.66 | 0.961523 |
Target: 5'- uGG-GAGcgCGCcgGGGCGcGGCACGG-Cu -3' miRNA: 3'- -CCaCUCaaGCGa-UCCGU-UCGUGCCuG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 15088 | 0.66 | 0.961523 |
Target: 5'- gGGguucgGAGUUCGgaAGGCGAGgC-CGGugGCg -3' miRNA: 3'- -CCa----CUCAAGCgaUCCGUUC-GuGCC--UG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 31340 | 0.66 | 0.964967 |
Target: 5'- cGGcgGGGggCGCgc-GCAGGCGCGG-Cg -3' miRNA: 3'- -CCa-CUCaaGCGaucCGUUCGUGCCuG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 67605 | 0.66 | 0.964967 |
Target: 5'- cGGacgGAGaccgCGCUccGGCGAGgGCGGAUg -3' miRNA: 3'- -CCa--CUCaa--GCGAu-CCGUUCgUGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 36515 | 0.66 | 0.968189 |
Target: 5'- gGGcGGGggCGCgcGGCGgccgGGCGgGGGCg -3' miRNA: 3'- -CCaCUCaaGCGauCCGU----UCGUgCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 36557 | 0.66 | 0.968189 |
Target: 5'- gGGcGGGggCGCgcGGCGgccgGGCGgGGGCg -3' miRNA: 3'- -CCaCUCaaGCGauCCGU----UCGUgCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 36599 | 0.66 | 0.968189 |
Target: 5'- gGGcGGGggCGCgcGGCGgccgGGCGgGGGCg -3' miRNA: 3'- -CCaCUCaaGCGauCCGU----UCGUgCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 32954 | 0.67 | 0.930801 |
Target: 5'- gGGUGGGagUGggGGGgGGGgACGGACa -3' miRNA: 3'- -CCACUCaaGCgaUCCgUUCgUGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 85824 | 0.67 | 0.930801 |
Target: 5'- cGGggGGGggCGg-GGGCGGGCGgGGGCu -3' miRNA: 3'- -CCa-CUCaaGCgaUCCGUUCGUgCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 86639 | 0.67 | 0.935921 |
Target: 5'- --cGAGUUCGagGGGCGGGUcuguauagcccuGCGGGCc -3' miRNA: 3'- ccaCUCAAGCgaUCCGUUCG------------UGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 105800 | 0.67 | 0.940794 |
Target: 5'- aGGUGAGgaUGCUuGGCcagAAGCGgGGGa -3' miRNA: 3'- -CCACUCaaGCGAuCCG---UUCGUgCCUg -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 30512 | 0.67 | 0.953137 |
Target: 5'- gGGUGAGgaggaaGCggaagcgggagggggGGGCGAcgugugugccguguGCACGGACg -3' miRNA: 3'- -CCACUCaag---CGa--------------UCCGUU--------------CGUGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 44624 | 0.67 | 0.953946 |
Target: 5'- cGGUGGGcgCGCccgugGGGCcauuGGGCGCaucGGACc -3' miRNA: 3'- -CCACUCaaGCGa----UCCG----UUCGUG---CCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 38402 | 0.67 | 0.953946 |
Target: 5'- cGUGAGUUC-CUGGacgcgcuaugaaGCGGGC-CGGGCc -3' miRNA: 3'- cCACUCAAGcGAUC------------CGUUCGuGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 4205 | 0.68 | 0.913947 |
Target: 5'- cGUG-GUcugcggCGCUGGcGgGGGCGCGGGCg -3' miRNA: 3'- cCACuCAa-----GCGAUC-CgUUCGUGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 147593 | 0.68 | 0.913947 |
Target: 5'- aGGUGAGcUUCuGCUgAGGCG-GCGgGGAg -3' miRNA: 3'- -CCACUC-AAG-CGA-UCCGUuCGUgCCUg -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 150854 | 0.68 | 0.907834 |
Target: 5'- cGGUcGGG-UCGC--GGCGGGCugGGAg -3' miRNA: 3'- -CCA-CUCaAGCGauCCGUUCGugCCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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