Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5290 | 3' | -53.4 | NC_001798.1 | + | 27795 | 1.12 | 0.00329 |
Target: 5'- gGGUGAGUUCGCUAGGCAAGCACGGACu -3' miRNA: 3'- -CCACUCAAGCGAUCCGUUCGUGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 132477 | 0.77 | 0.456959 |
Target: 5'- uGGUGuccguGUaccagUCGCUgGGGCGGGUACGGACu -3' miRNA: 3'- -CCACu----CA-----AGCGA-UCCGUUCGUGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 15249 | 0.75 | 0.596839 |
Target: 5'- -uUGGGUcCGUUGGGgGGGUACGGGCg -3' miRNA: 3'- ccACUCAaGCGAUCCgUUCGUGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 148416 | 0.75 | 0.596839 |
Target: 5'- gGGUGGGcgCcgggGCggGGGUggGCACGGGCg -3' miRNA: 3'- -CCACUCaaG----CGa-UCCGuuCGUGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 46525 | 0.73 | 0.669799 |
Target: 5'- cGGUGAGggUCGggGGGguGGCcCGGAUg -3' miRNA: 3'- -CCACUCa-AGCgaUCCguUCGuGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 129277 | 0.73 | 0.700764 |
Target: 5'- uGGUGAcGUUC-CUcGGCAGGCaccgcGCGGGCg -3' miRNA: 3'- -CCACU-CAAGcGAuCCGUUCG-----UGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 148376 | 0.72 | 0.741164 |
Target: 5'- gGGUGAGgaggggcgggCGUggcGGGCAGGUguGCGGGCg -3' miRNA: 3'- -CCACUCaa--------GCGa--UCCGUUCG--UGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 144557 | 0.71 | 0.779979 |
Target: 5'- cGUGGGggggCGUUcgaaaGGGCGAGgACGGGCg -3' miRNA: 3'- cCACUCaa--GCGA-----UCCGUUCgUGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 38180 | 0.7 | 0.816591 |
Target: 5'- uGGaUGGGgcCGCUGGucgaGCAggaGGCGCGGACu -3' miRNA: 3'- -CC-ACUCaaGCGAUC----CGU---UCGUGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 149247 | 0.7 | 0.833887 |
Target: 5'- cGG-GGGcgUCGCc-GGCcGGCGCGGGCg -3' miRNA: 3'- -CCaCUCa-AGCGauCCGuUCGUGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 93538 | 0.7 | 0.858381 |
Target: 5'- --gGAGUUCGCc-GGCGAGCACcuGGCc -3' miRNA: 3'- ccaCUCAAGCGauCCGUUCGUGc-CUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 79261 | 0.69 | 0.866129 |
Target: 5'- uGGcgGAGUUCGaCgcGGCGGcCGCGGACc -3' miRNA: 3'- -CCa-CUCAAGC-GauCCGUUcGUGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 57532 | 0.69 | 0.873658 |
Target: 5'- gGGUGuGGUUCGggGGGCGGaugcguuccGCGgGGACg -3' miRNA: 3'- -CCAC-UCAAGCgaUCCGUU---------CGUgCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 34107 | 0.69 | 0.873658 |
Target: 5'- cGUGGGggCGgUGGGC--GUACGGGCc -3' miRNA: 3'- cCACUCaaGCgAUCCGuuCGUGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 30929 | 0.69 | 0.880962 |
Target: 5'- cGGUGAGggCgGCggGGGuCGGGCgggggGCGGGCg -3' miRNA: 3'- -CCACUCaaG-CGa-UCC-GUUCG-----UGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 53 | 0.69 | 0.887339 |
Target: 5'- uGGggGGGggCGCgaAGGCGGGCggcggcgGCGGGCg -3' miRNA: 3'- -CCa-CUCaaGCGa-UCCGUUCG-------UGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 154391 | 0.69 | 0.887339 |
Target: 5'- uGGggGGGggCGCgaAGGCGGGCggcggcgGCGGGCg -3' miRNA: 3'- -CCa-CUCaaGCGa-UCCGUUCG-------UGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 150086 | 0.69 | 0.888036 |
Target: 5'- --gGGGggCGagGGGCGAGCGCGGGg -3' miRNA: 3'- ccaCUCaaGCgaUCCGUUCGUGCCUg -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 23881 | 0.69 | 0.894875 |
Target: 5'- --gGGGggCGCccgAGGCGgaggaGGCGCGGGCc -3' miRNA: 3'- ccaCUCaaGCGa--UCCGU-----UCGUGCCUG- -5' |
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5290 | 3' | -53.4 | NC_001798.1 | + | 79929 | 0.68 | 0.901476 |
Target: 5'- -uUGGGUgUCGCUGGGCccAGCugGG-Cu -3' miRNA: 3'- ccACUCA-AGCGAUCCGu-UCGugCCuG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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