Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5296 | 5' | -61.5 | NC_001798.1 | + | 21798 | 0.66 | 0.743063 |
Target: 5'- cCCG-UCCGGGcccGCcUCGGgGCggagCCCGCg -3' miRNA: 3'- -GGCuAGGCCCa--CGcAGCCaCG----GGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 37396 | 0.66 | 0.737548 |
Target: 5'- aCCGAgccaCCGGGcGgGUCcGUGgggccggccgaccaaCCCCGCg -3' miRNA: 3'- -GGCUa---GGCCCaCgCAGcCAC---------------GGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 140203 | 0.66 | 0.740309 |
Target: 5'- gCCGGUgCUGGuGUGCGUgGgGUcgccgacccagacgGCCUCGCu -3' miRNA: 3'- -GGCUA-GGCC-CACGCAgC-CA--------------CGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 15416 | 0.66 | 0.743063 |
Target: 5'- gCgGGUCCGGGagGgGUuguuUGGgGCCCCGg -3' miRNA: 3'- -GgCUAGGCCCa-CgCA----GCCaCGGGGCg -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 51815 | 0.66 | 0.743063 |
Target: 5'- gCGAUCaaCGGGUGgGUcugCGGgacGCgCCUGCa -3' miRNA: 3'- gGCUAG--GCCCACgCA---GCCa--CG-GGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 2968 | 0.66 | 0.743063 |
Target: 5'- gCGcgUCGGcGUGCGgCGGggcgGCcggCCCGCg -3' miRNA: 3'- gGCuaGGCC-CACGCaGCCa---CG---GGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 132546 | 0.67 | 0.647407 |
Target: 5'- aCgGGUCCGGGgcGCGcUCGGaGCCCgucuuuaCGCc -3' miRNA: 3'- -GgCUAGGCCCa-CGC-AGCCaCGGG-------GCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 153011 | 0.67 | 0.648372 |
Target: 5'- gCGGUcgCCGGG-GCGgagucCGG-GCCCgCGCg -3' miRNA: 3'- gGCUA--GGCCCaCGCa----GCCaCGGG-GCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 5522 | 0.67 | 0.658012 |
Target: 5'- gCCcuUCCGGGUuCGU-GGUaaugagaugccgGCCCCGCg -3' miRNA: 3'- -GGcuAGGCCCAcGCAgCCA------------CGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 6626 | 0.67 | 0.658012 |
Target: 5'- aCGggCCGGG-GgGaCGGgGCCCCGa -3' miRNA: 3'- gGCuaGGCCCaCgCaGCCaCGGGGCg -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 4902 | 0.67 | 0.658012 |
Target: 5'- -aGAUCCGGG-GcCGcCGGUcGUCuCCGCc -3' miRNA: 3'- ggCUAGGCCCaC-GCaGCCA-CGG-GGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 44884 | 0.67 | 0.667634 |
Target: 5'- gCGuguUCCGGGaugGCGUCccugcucgGGUGCUgUGCg -3' miRNA: 3'- gGCu--AGGCCCa--CGCAG--------CCACGGgGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 9165 | 0.67 | 0.676272 |
Target: 5'- cCCGcgCCGGGgggcaGgGUCucuggcgGGU-CCCCGCg -3' miRNA: 3'- -GGCuaGGCCCa----CgCAG-------CCAcGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 11697 | 0.67 | 0.677231 |
Target: 5'- gUCGuuGUCCguggagGGGUGgGUCGGgagGCUCCGg -3' miRNA: 3'- -GGC--UAGG------CCCACgCAGCCa--CGGGGCg -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 32372 | 0.67 | 0.677231 |
Target: 5'- cCCGAgcCCGGGgcccGCGaccCGGcGCCCgGCc -3' miRNA: 3'- -GGCUa-GGCCCa---CGCa--GCCaCGGGgCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 65761 | 0.67 | 0.686794 |
Target: 5'- gCGGUgCCGGGgcugGCGUCGuUGaacgCCUGCa -3' miRNA: 3'- gGCUA-GGCCCa---CGCAGCcACg---GGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 48121 | 0.67 | 0.686794 |
Target: 5'- cCCGGguggCCGGGUucaacaagcGCGUCuucUGCgCCGCg -3' miRNA: 3'- -GGCUa---GGCCCA---------CGCAGcc-ACGgGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 43018 | 0.68 | 0.619409 |
Target: 5'- gCCGc-CCGGGgggaGCG-CGGgGCCCCGg -3' miRNA: 3'- -GGCuaGGCCCa---CGCaGCCaCGGGGCg -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 41801 | 0.68 | 0.619409 |
Target: 5'- -aGGUCCGGGc-CGUCGcGcgacuUGCCCUGCc -3' miRNA: 3'- ggCUAGGCCCacGCAGC-C-----ACGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 43638 | 0.68 | 0.609763 |
Target: 5'- cCCGAcCCaGGG-GCGagGGcUGCUCCGUg -3' miRNA: 3'- -GGCUaGG-CCCaCGCagCC-ACGGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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