Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
5296 | 5' | -61.5 | NC_001798.1 | + | 31891 | 0.66 | 0.705793 |
Target: 5'- cCCGGaagaggCgCGGGU-CGgacUCGG-GCCCCGCg -3' miRNA: 3'- -GGCUa-----G-GCCCAcGC---AGCCaCGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 32372 | 0.67 | 0.677231 |
Target: 5'- cCCGAgcCCGGGgcccGCGaccCGGcGCCCgGCc -3' miRNA: 3'- -GGCUa-GGCCCa---CGCa--GCCaCGGGgCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 34999 | 0.66 | 0.696317 |
Target: 5'- uCCGG-CCGGG-GCGcaccUCGGcggccaaGCCCCGg -3' miRNA: 3'- -GGCUaGGCCCaCGC----AGCCa------CGGGGCg -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 37396 | 0.66 | 0.737548 |
Target: 5'- aCCGAgccaCCGGGcGgGUCcGUGgggccggccgaccaaCCCCGCg -3' miRNA: 3'- -GGCUa---GGCCCaCgCAGcCAC---------------GGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 39815 | 0.7 | 0.496781 |
Target: 5'- gUGGUCgCGGGUGgcggauCGUCGGcuCCCCGCc -3' miRNA: 3'- gGCUAG-GCCCAC------GCAGCCacGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 41801 | 0.68 | 0.619409 |
Target: 5'- -aGGUCCGGGc-CGUCGcGcgacuUGCCCUGCc -3' miRNA: 3'- ggCUAGGCCCacGCAGC-C-----ACGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 42680 | 0.66 | 0.752184 |
Target: 5'- cUCGucgCCGGGaccaccgGCGUCGGggaaccaGuCCCCGUc -3' miRNA: 3'- -GGCua-GGCCCa------CGCAGCCa------C-GGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 43018 | 0.68 | 0.619409 |
Target: 5'- gCCGc-CCGGGgggaGCG-CGGgGCCCCGg -3' miRNA: 3'- -GGCuaGGCCCa---CGCaGCCaCGGGGCg -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 43259 | 0.77 | 0.185589 |
Target: 5'- gCGAUcgCCGGGgGCGUC-GUGCCCUGCu -3' miRNA: 3'- gGCUA--GGCCCaCGCAGcCACGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 43638 | 0.68 | 0.609763 |
Target: 5'- cCCGAcCCaGGG-GCGagGGcUGCUCCGUg -3' miRNA: 3'- -GGCUaGG-CCCaCGCagCC-ACGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 44884 | 0.67 | 0.667634 |
Target: 5'- gCGuguUCCGGGaugGCGUCccugcucgGGUGCUgUGCg -3' miRNA: 3'- gGCu--AGGCCCa--CGCAG--------CCACGGgGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 46003 | 0.74 | 0.280564 |
Target: 5'- -gGAUCCaGGGgaggGCGUgGGU-CCCCGCg -3' miRNA: 3'- ggCUAGG-CCCa---CGCAgCCAcGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 48121 | 0.67 | 0.686794 |
Target: 5'- cCCGGguggCCGGGUucaacaagcGCGUCuucUGCgCCGCg -3' miRNA: 3'- -GGCUa---GGCCCA---------CGCAGcc-ACGgGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 49125 | 0.74 | 0.306319 |
Target: 5'- aCGAUCUGGGcuucaGCG-CGG-GUCCCGCg -3' miRNA: 3'- gGCUAGGCCCa----CGCaGCCaCGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 51258 | 0.68 | 0.629063 |
Target: 5'- gCGGacgCCGGGacaGCGccaucacgCGG-GCCCCGCg -3' miRNA: 3'- gGCUa--GGCCCa--CGCa-------GCCaCGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 51815 | 0.66 | 0.743063 |
Target: 5'- gCGAUCaaCGGGUGgGUcugCGGgacGCgCCUGCa -3' miRNA: 3'- gGCUAG--GCCCACgCA---GCCa--CG-GGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 65761 | 0.67 | 0.686794 |
Target: 5'- gCGGUgCCGGGgcugGCGUCGuUGaacgCCUGCa -3' miRNA: 3'- gGCUA-GGCCCa---CGCAGCcACg---GGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 68511 | 0.69 | 0.542988 |
Target: 5'- uUCGGUUCGGGggaggggGCGUCauguccucgGCCCCGUg -3' miRNA: 3'- -GGCUAGGCCCa------CGCAGcca------CGGGGCG- -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 69842 | 0.7 | 0.496781 |
Target: 5'- uUGGUCCGGGccGcCGUCGGccGCCCCc- -3' miRNA: 3'- gGCUAGGCCCa-C-GCAGCCa-CGGGGcg -5' |
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5296 | 5' | -61.5 | NC_001798.1 | + | 70935 | 0.73 | 0.326799 |
Target: 5'- cCCGAU-CGGG-GCG-CGGUgGUCCCGCc -3' miRNA: 3'- -GGCUAgGCCCaCGCaGCCA-CGGGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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