miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5298 5' -66.5 NC_001798.1 + 5575 0.67 0.434211
Target:  5'- --cGC-CGGCCCCAaa-GGGgCCGGCg -3'
miRNA:   3'- gcaCGcGCCGGGGUccgCCCaGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 11385 0.67 0.434211
Target:  5'- --aGCuCGGCUCCgAGGCGGGcCaUGGCc -3'
miRNA:   3'- gcaCGcGCCGGGG-UCCGCCCaG-GCCG- -5'
5298 5' -66.5 NC_001798.1 + 1495 0.67 0.434211
Target:  5'- gCGUcGCcCGcGCCCgAGGCGGcGgcCCGGCc -3'
miRNA:   3'- -GCA-CGcGC-CGGGgUCCGCC-Ca-GGCCG- -5'
5298 5' -66.5 NC_001798.1 + 53955 0.67 0.434211
Target:  5'- aGUGCaUGGCCCUgcGGGCGGcggucagcgacGUCCugGGCc -3'
miRNA:   3'- gCACGcGCCGGGG--UCCGCC-----------CAGG--CCG- -5'
5298 5' -66.5 NC_001798.1 + 28171 0.67 0.434211
Target:  5'- aGUGgGCGaacaGCCCCccgagcgaGGGCGGGgggaaGGCg -3'
miRNA:   3'- gCACgCGC----CGGGG--------UCCGCCCagg--CCG- -5'
5298 5' -66.5 NC_001798.1 + 14955 0.67 0.431726
Target:  5'- gGUGUGgGGCCCgAGGCauGUCCuuagcgggagcuugGGCg -3'
miRNA:   3'- gCACGCgCCGGGgUCCGccCAGG--------------CCG- -5'
5298 5' -66.5 NC_001798.1 + 37148 0.67 0.429249
Target:  5'- --aGCGUGGCCgcucgcgccgcgccgCCuGGCGGGccgCuCGGCg -3'
miRNA:   3'- gcaCGCGCCGG---------------GGuCCGCCCa--G-GCCG- -5'
5298 5' -66.5 NC_001798.1 + 53606 0.67 0.42596
Target:  5'- gGUGCGC-GCCCCguucaAGaGCGGGgCCGccGCg -3'
miRNA:   3'- gCACGCGcCGGGG-----UC-CGCCCaGGC--CG- -5'
5298 5' -66.5 NC_001798.1 + 2505 0.67 0.42596
Target:  5'- gCGggGCGCGGCggCCGcGGCGGcGgcgUCGGCg -3'
miRNA:   3'- -GCa-CGCGCCGg-GGU-CCGCC-Ca--GGCCG- -5'
5298 5' -66.5 NC_001798.1 + 5430 0.67 0.42596
Target:  5'- --cGCGCGGCaucucauuagcgCCCGGcGCGGG--CGGCu -3'
miRNA:   3'- gcaCGCGCCG------------GGGUC-CGCCCagGCCG- -5'
5298 5' -66.5 NC_001798.1 + 27346 0.67 0.42596
Target:  5'- cCGUGUGCGGg--CGGGCGGGUgcUUGGUg -3'
miRNA:   3'- -GCACGCGCCgggGUCCGCCCA--GGCCG- -5'
5298 5' -66.5 NC_001798.1 + 74383 0.67 0.42596
Target:  5'- uGUGCccucCGGCCCgGGGgcCGuGGcgCCGGCg -3'
miRNA:   3'- gCACGc---GCCGGGgUCC--GC-CCa-GGCCG- -5'
5298 5' -66.5 NC_001798.1 + 153665 0.67 0.42596
Target:  5'- --cGCGCGGCgcguCCgCGGGCGGGgacgCgGGg -3'
miRNA:   3'- gcaCGCGCCG----GG-GUCCGCCCa---GgCCg -5'
5298 5' -66.5 NC_001798.1 + 146628 0.67 0.42596
Target:  5'- --cGCauuaGGCCCCc-GCGGGcaUCCGGCg -3'
miRNA:   3'- gcaCGcg--CCGGGGucCGCCC--AGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 149670 0.67 0.42514
Target:  5'- gGUcGCG-GGCCCCGGGCucGGGgccgCCcucgcguGGCg -3'
miRNA:   3'- gCA-CGCgCCGGGGUCCG--CCCa---GG-------CCG- -5'
5298 5' -66.5 NC_001798.1 + 36264 0.67 0.417802
Target:  5'- -cUGUGUGGaCCCCgGGGUGGG--CGGCg -3'
miRNA:   3'- gcACGCGCC-GGGG-UCCGCCCagGCCG- -5'
5298 5' -66.5 NC_001798.1 + 2425 0.67 0.417802
Target:  5'- gCGUGUGgcugGGCCCC-GGCGG--CUGGCg -3'
miRNA:   3'- -GCACGCg---CCGGGGuCCGCCcaGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 37390 0.67 0.417802
Target:  5'- uGUcCGacCGaGCCaCCGGGCGGGUCCguggGGCc -3'
miRNA:   3'- gCAcGC--GC-CGG-GGUCCGCCCAGG----CCG- -5'
5298 5' -66.5 NC_001798.1 + 43883 0.67 0.417802
Target:  5'- gCG-GcCGCGGCCCC--GCGGGaguaCUGGCu -3'
miRNA:   3'- -GCaC-GCGCCGGGGucCGCCCa---GGCCG- -5'
5298 5' -66.5 NC_001798.1 + 52871 0.67 0.417802
Target:  5'- cCGUGCuGgGGCC----GCGGGUCCGcGCg -3'
miRNA:   3'- -GCACG-CgCCGGggucCGCCCAGGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.