miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5298 5' -66.5 NC_001798.1 + 20283 1.11 0.000294
Target:  5'- aCGUGCGCGGCCCCAGGCGGGUCCGGCa -3'
miRNA:   3'- -GCACGCGCCGGGGUCCGCCCAGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 52594 0.81 0.049358
Target:  5'- gCGUGCGUGGCCCUGgccgcguuugacGGCGGGUCgaCGGCc -3'
miRNA:   3'- -GCACGCGCCGGGGU------------CCGCCCAG--GCCG- -5'
5298 5' -66.5 NC_001798.1 + 139346 0.79 0.061826
Target:  5'- gCGcUGUGCGGCCau-GGCGGcGUCCGGCg -3'
miRNA:   3'- -GC-ACGCGCCGGgguCCGCC-CAGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 127937 0.79 0.066622
Target:  5'- aCG-GCGgGGCCCCGGGCGaaaaGGcCCGGCc -3'
miRNA:   3'- -GCaCGCgCCGGGGUCCGC----CCaGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 26347 0.76 0.106363
Target:  5'- cCGUGCGCGGCggCCCGGcggagcugcGCGGGcCgCGGCg -3'
miRNA:   3'- -GCACGCGCCG--GGGUC---------CGCCCaG-GCCG- -5'
5298 5' -66.5 NC_001798.1 + 121282 0.76 0.106363
Target:  5'- uCGUGCGCGGCCgCCccgacGGUGGGg-CGGCc -3'
miRNA:   3'- -GCACGCGCCGG-GGu----CCGCCCagGCCG- -5'
5298 5' -66.5 NC_001798.1 + 4105 0.76 0.108981
Target:  5'- gCGgGCuCGGCCCUGGGCGGGcUCGGCc -3'
miRNA:   3'- -GCaCGcGCCGGGGUCCGCCCaGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 2470 0.76 0.111659
Target:  5'- gGU-CGgGGCCCUcGGCGGG-CCGGCg -3'
miRNA:   3'- gCAcGCgCCGGGGuCCGCCCaGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 135987 0.75 0.1172
Target:  5'- uCGUGCGCGuauGUCCCggGGGCGGGgagucggUCGGCg -3'
miRNA:   3'- -GCACGCGC---CGGGG--UCCGCCCa------GGCCG- -5'
5298 5' -66.5 NC_001798.1 + 36608 0.75 0.120066
Target:  5'- --cGCGCGGCggCCGGGCGGGggcgCgCGGCg -3'
miRNA:   3'- gcaCGCGCCGg-GGUCCGCCCa---G-GCCG- -5'
5298 5' -66.5 NC_001798.1 + 36524 0.75 0.120066
Target:  5'- --cGCGCGGCggCCGGGCGGGggcgCgCGGCg -3'
miRNA:   3'- gcaCGCGCCGg-GGUCCGCCCa---G-GCCG- -5'
5298 5' -66.5 NC_001798.1 + 36566 0.75 0.120066
Target:  5'- --cGCGCGGCggCCGGGCGGGggcgCgCGGCg -3'
miRNA:   3'- gcaCGCGCCGg-GGUCCGCCCa---G-GCCG- -5'
5298 5' -66.5 NC_001798.1 + 131365 0.75 0.120066
Target:  5'- cCG-GCGCGGCCUCGGGggauccccUGGGggcCCGGCg -3'
miRNA:   3'- -GCaCGCGCCGGGGUCC--------GCCCa--GGCCG- -5'
5298 5' -66.5 NC_001798.1 + 40583 0.75 0.122997
Target:  5'- gGUGCGUaGGCCCgAGGCGGGUCg--- -3'
miRNA:   3'- gCACGCG-CCGGGgUCCGCCCAGgccg -5'
5298 5' -66.5 NC_001798.1 + 115528 0.75 0.132192
Target:  5'- aCGU-CGCGGCCCCGGcCGGccCCGGCg -3'
miRNA:   3'- -GCAcGCGCCGGGGUCcGCCcaGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 66836 0.75 0.135396
Target:  5'- gGUGC-CGGCgCCCAGGcCGGGguuUCCGGg -3'
miRNA:   3'- gCACGcGCCG-GGGUCC-GCCC---AGGCCg -5'
5298 5' -66.5 NC_001798.1 + 102227 0.74 0.138671
Target:  5'- cCGgGCGCGGCUCgGGGCGGGccucgcCCGGg -3'
miRNA:   3'- -GCaCGCGCCGGGgUCCGCCCa-----GGCCg -5'
5298 5' -66.5 NC_001798.1 + 2998 0.74 0.148935
Target:  5'- --cGCG-GGCCCCGGGCGcGGgggCgCGGCg -3'
miRNA:   3'- gcaCGCgCCGGGGUCCGC-CCa--G-GCCG- -5'
5298 5' -66.5 NC_001798.1 + 134642 0.73 0.166802
Target:  5'- uGUGCgaggucggccuGCGGCCCCGcggacacccgcaGCGGGUCaCGGCg -3'
miRNA:   3'- gCACG-----------CGCCGGGGUc-----------CGCCCAG-GCCG- -5'
5298 5' -66.5 NC_001798.1 + 98589 0.73 0.167587
Target:  5'- gCGUcgGCGGCCCC-GGCGGccCCGGCg -3'
miRNA:   3'- -GCAcgCGCCGGGGuCCGCCcaGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.