miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5298 5' -66.5 NC_001798.1 + 1495 0.67 0.434211
Target:  5'- gCGUcGCcCGcGCCCgAGGCGGcGgcCCGGCc -3'
miRNA:   3'- -GCA-CGcGC-CGGGgUCCGCC-Ca-GGCCG- -5'
5298 5' -66.5 NC_001798.1 + 1669 0.69 0.314232
Target:  5'- gCGUGCGCGGCCuCCAcGCGcGcGaagacccCCGGCc -3'
miRNA:   3'- -GCACGCGCCGG-GGUcCGC-C-Ca------GGCCG- -5'
5298 5' -66.5 NC_001798.1 + 1987 0.67 0.393912
Target:  5'- uCGgggGCGCGGUccaguugcccgCCCAGGCGGccgUGGCg -3'
miRNA:   3'- -GCa--CGCGCCG-----------GGGUCCGCCcagGCCG- -5'
5298 5' -66.5 NC_001798.1 + 2112 0.67 0.386148
Target:  5'- cCG-GCGCGGCCCgCGGcCaGGUccucgcCCGGCa -3'
miRNA:   3'- -GCaCGCGCCGGG-GUCcGcCCA------GGCCG- -5'
5298 5' -66.5 NC_001798.1 + 2253 0.66 0.4768
Target:  5'- gCGgGCGC-GCCgCCgggGGGCGGGg-CGGCg -3'
miRNA:   3'- -GCaCGCGcCGG-GG---UCCGCCCagGCCG- -5'
5298 5' -66.5 NC_001798.1 + 2425 0.67 0.417802
Target:  5'- gCGUGUGgcugGGCCCC-GGCGG--CUGGCg -3'
miRNA:   3'- -GCACGCg---CCGGGGuCCGCCcaGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 2470 0.76 0.111659
Target:  5'- gGU-CGgGGCCCUcGGCGGG-CCGGCg -3'
miRNA:   3'- gCAcGCgCCGGGGuCCGCCCaGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 2505 0.67 0.42596
Target:  5'- gCGggGCGCGGCggCCGcGGCGGcGgcgUCGGCg -3'
miRNA:   3'- -GCa-CGCGCCGg-GGU-CCGCC-Ca--GGCCG- -5'
5298 5' -66.5 NC_001798.1 + 2541 0.71 0.221073
Target:  5'- gCGggggGCGCGGCCCCcgcGGGaGGGg-CGGCc -3'
miRNA:   3'- -GCa---CGCGCCGGGG---UCCgCCCagGCCG- -5'
5298 5' -66.5 NC_001798.1 + 2586 0.69 0.307624
Target:  5'- gCGUccGCGCGGCUCUucuucggggGGcGCGGGgcgccgcCCGGCg -3'
miRNA:   3'- -GCA--CGCGCCGGGG---------UC-CGCCCa------GGCCG- -5'
5298 5' -66.5 NC_001798.1 + 2944 0.68 0.34173
Target:  5'- --cGCGCaGCCaggcgcgCAGGCGGGgcgcgUCGGCg -3'
miRNA:   3'- gcaCGCGcCGGg------GUCCGCCCa----GGCCG- -5'
5298 5' -66.5 NC_001798.1 + 2998 0.74 0.148935
Target:  5'- --cGCG-GGCCCCGGGCGcGGgggCgCGGCg -3'
miRNA:   3'- gcaCGCgCCGGGGUCCGC-CCa--G-GCCG- -5'
5298 5' -66.5 NC_001798.1 + 3188 0.7 0.264342
Target:  5'- uCGU-CGuCGGCCCCggccggcgcggAGGCGGG-CgCGGCg -3'
miRNA:   3'- -GCAcGC-GCCGGGG-----------UCCGCCCaG-GCCG- -5'
5298 5' -66.5 NC_001798.1 + 3521 0.68 0.348871
Target:  5'- aCGUGCGCcaGGCCCCAGccgaaGCGGcccgCCgccauGGCg -3'
miRNA:   3'- -GCACGCG--CCGGGGUC-----CGCCca--GG-----CCG- -5'
5298 5' -66.5 NC_001798.1 + 3881 0.72 0.201792
Target:  5'- --aGCaCGcGCCCCggGGGCGGGgggCCGGCc -3'
miRNA:   3'- gcaCGcGC-CGGGG--UCCGCCCa--GGCCG- -5'
5298 5' -66.5 NC_001798.1 + 4010 0.72 0.19271
Target:  5'- cCGUGaaGCGGCCCguGGCGucgcGG-CCGGCc -3'
miRNA:   3'- -GCACg-CGCCGGGguCCGC----CCaGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 4047 0.7 0.276181
Target:  5'- --cGCGCGGgCCC-GGCGGcGcUCCaGGCg -3'
miRNA:   3'- gcaCGCGCCgGGGuCCGCC-C-AGG-CCG- -5'
5298 5' -66.5 NC_001798.1 + 4071 0.66 0.494409
Target:  5'- nCGgccCGCGGUCgCCGcGG-GGGUCCGGg -3'
miRNA:   3'- -GCac-GCGCCGG-GGU-CCgCCCAGGCCg -5'
5298 5' -66.5 NC_001798.1 + 4105 0.76 0.108981
Target:  5'- gCGgGCuCGGCCCUGGGCGGGcUCGGCc -3'
miRNA:   3'- -GCaCGcGCCGGGGUCCGCCCaGGCCG- -5'
5298 5' -66.5 NC_001798.1 + 4204 0.66 0.485566
Target:  5'- gCGUGgucUGCGGCgCU-GGCGGGggcgCgGGCg -3'
miRNA:   3'- -GCAC---GCGCCGgGGuCCGCCCa---GgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.