miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5299 5' -62.6 NC_001798.1 + 21941 0.67 0.564733
Target:  5'- gGCCCCGCCcccuuugggcGGAgcgcgggaugaCGCGGGccCCGGGc- -3'
miRNA:   3'- -CGGGGCGG----------CCU-----------GCGCCUaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 60476 0.67 0.564733
Target:  5'- uCUCCGUCGGACGCGGucgUCCa---- -3'
miRNA:   3'- cGGGGCGGCCUGCGCCua-AGGcccaa -5'
5299 5' -62.6 NC_001798.1 + 25072 0.67 0.563774
Target:  5'- aGCCCCGCCccggccaGGGCGCcg---CCGGGc- -3'
miRNA:   3'- -CGGGGCGG-------CCUGCGccuaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 20356 0.67 0.555161
Target:  5'- gGCgCUGCCGG--GCGGGUUCgGGGc- -3'
miRNA:   3'- -CGgGGCGGCCugCGCCUAAGgCCCaa -5'
5299 5' -62.6 NC_001798.1 + 22263 0.67 0.555161
Target:  5'- cGCCCgCGCCGGGCGCuaaugaGAUgccgCgCGGGc- -3'
miRNA:   3'- -CGGG-GCGGCCUGCGc-----CUAa---G-GCCCaa -5'
5299 5' -62.6 NC_001798.1 + 65224 0.67 0.555161
Target:  5'- aCCCCaCUGGAuCGCuuGGAggCCGGGUg -3'
miRNA:   3'- cGGGGcGGCCU-GCG--CCUaaGGCCCAa -5'
5299 5' -62.6 NC_001798.1 + 9645 0.67 0.555161
Target:  5'- cGCCCCgaggcgcagcggGCCGcGCGCGGAgggCgCGGGa- -3'
miRNA:   3'- -CGGGG------------CGGCcUGCGCCUaa-G-GCCCaa -5'
5299 5' -62.6 NC_001798.1 + 31141 0.67 0.545637
Target:  5'- cGCCCCgGCgCGGGgGCGGcggUgCGGGg- -3'
miRNA:   3'- -CGGGG-CG-GCCUgCGCCua-AgGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 142130 0.67 0.545637
Target:  5'- cGCgCUGCCGGACGCGGca--CaGGUg -3'
miRNA:   3'- -CGgGGCGGCCUGCGCCuaagGcCCAa -5'
5299 5' -62.6 NC_001798.1 + 150829 0.67 0.545637
Target:  5'- uGCUCCGCgGGGCGCcagGGGgcgccggUCGGGUc -3'
miRNA:   3'- -CGGGGCGgCCUGCG---CCUaa-----GGCCCAa -5'
5299 5' -62.6 NC_001798.1 + 66844 0.68 0.536167
Target:  5'- cGCCCagGCCGGGguuucCGgGGAgucgCCGGGg- -3'
miRNA:   3'- -CGGGg-CGGCCU-----GCgCCUaa--GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 135209 0.68 0.536167
Target:  5'- cGCCCuCGCgGGccuCGgGGAggCCGGGc- -3'
miRNA:   3'- -CGGG-GCGgCCu--GCgCCUaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 106108 0.68 0.526754
Target:  5'- cGCCgcgaCCGCCGGGucUGCGG-UUCCGGcGg- -3'
miRNA:   3'- -CGG----GGCGGCCU--GCGCCuAAGGCC-Caa -5'
5299 5' -62.6 NC_001798.1 + 27214 0.68 0.517404
Target:  5'- aGCCCCcgggGCgGGGCGCGGGggaggcggCCGcGGg- -3'
miRNA:   3'- -CGGGG----CGgCCUGCGCCUaa------GGC-CCaa -5'
5299 5' -62.6 NC_001798.1 + 55975 0.68 0.517404
Target:  5'- aGCCCgCGCCGGGgaggcCGCGGGggCgaGGGg- -3'
miRNA:   3'- -CGGG-GCGGCCU-----GCGCCUaaGg-CCCaa -5'
5299 5' -62.6 NC_001798.1 + 96678 0.68 0.517404
Target:  5'- gGCCgCGCUGGAgCGCG---UCCGGGa- -3'
miRNA:   3'- -CGGgGCGGCCU-GCGCcuaAGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 4458 0.68 0.517404
Target:  5'- cGCCCCG-CGGAcCGCGGAcgucgucUCCGGu-- -3'
miRNA:   3'- -CGGGGCgGCCU-GCGCCUa------AGGCCcaa -5'
5299 5' -62.6 NC_001798.1 + 52949 0.68 0.508121
Target:  5'- cGCCCU-CCGGGCGCacgugUCCGGGa- -3'
miRNA:   3'- -CGGGGcGGCCUGCGccua-AGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 77516 0.68 0.508121
Target:  5'- aGCCUCGCgGGGCacgagGCuGGGUUCgGGGg- -3'
miRNA:   3'- -CGGGGCGgCCUG-----CG-CCUAAGgCCCaa -5'
5299 5' -62.6 NC_001798.1 + 98099 0.68 0.507197
Target:  5'- -gCCCGCUucaucauGGGCGCGGGgggUUCGGGc- -3'
miRNA:   3'- cgGGGCGG-------CCUGCGCCUa--AGGCCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.