miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5299 5' -62.6 NC_001798.1 + 77201 0.66 0.603391
Target:  5'- aGUCCCGCggcgacggUGGACGCGGccgUgCGGGc- -3'
miRNA:   3'- -CGGGGCG--------GCCUGCGCCua-AgGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 16940 0.66 0.603391
Target:  5'- cGCCCC-CCGGGgggaGCGGggUCacuuGGGUg -3'
miRNA:   3'- -CGGGGcGGCCUg---CGCCuaAGg---CCCAa -5'
5299 5' -62.6 NC_001798.1 + 134660 0.66 0.602419
Target:  5'- gGCCCCG-CGGACacccgcaGCGGGUcacggCgCGGGUg -3'
miRNA:   3'- -CGGGGCgGCCUG-------CGCCUAa----G-GCCCAa -5'
5299 5' -62.6 NC_001798.1 + 51199 0.66 0.602419
Target:  5'- cCCCCGCCGGGCGUccuUUCCGcgccccaGGUc -3'
miRNA:   3'- cGGGGCGGCCUGCGccuAAGGC-------CCAa -5'
5299 5' -62.6 NC_001798.1 + 4843 0.67 0.593682
Target:  5'- cGCgCgGCgGGGCGaCGG--UCCGGGUUc -3'
miRNA:   3'- -CGgGgCGgCCUGC-GCCuaAGGCCCAA- -5'
5299 5' -62.6 NC_001798.1 + 104332 0.67 0.593682
Target:  5'- gGCCuCCGCCGGGa-CGGcucCCGGGa- -3'
miRNA:   3'- -CGG-GGCGGCCUgcGCCuaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 132181 0.67 0.593682
Target:  5'- cGCCCCcCCGGACGCcaccuucUUCGGGg- -3'
miRNA:   3'- -CGGGGcGGCCUGCGccua---AGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 3762 0.67 0.593682
Target:  5'- cGCCCaGCuCGGGCGCccacacGGGcgCCGGGg- -3'
miRNA:   3'- -CGGGgCG-GCCUGCG------CCUaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 27565 0.67 0.593682
Target:  5'- gGCgCCCGCgGGGgaGCGGccggcUCCGGGg- -3'
miRNA:   3'- -CG-GGGCGgCCUg-CGCCua---AGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 151606 0.67 0.583999
Target:  5'- cGCUCgGCCGGGgGcCGGg--CCGGGg- -3'
miRNA:   3'- -CGGGgCGGCCUgC-GCCuaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 84201 0.67 0.583999
Target:  5'- uGCUCCGCCGuGAuCGCGccccCCGGGg- -3'
miRNA:   3'- -CGGGGCGGC-CU-GCGCcuaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 122059 0.67 0.583999
Target:  5'- aGCCCugggcgCGUCGGACGCGGAggcggugCUGGcGg- -3'
miRNA:   3'- -CGGG------GCGGCCUGCGCCUaa-----GGCC-Caa -5'
5299 5' -62.6 NC_001798.1 + 24285 0.67 0.583999
Target:  5'- cGCCCCuGCUGGcgcgcgagaACGCGGcgcugaCCGGGg- -3'
miRNA:   3'- -CGGGG-CGGCC---------UGCGCCuaa---GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 58095 0.67 0.583032
Target:  5'- gGCCCCGCaGGGuCGCGGccgcccagggcccGgcgUCUGGGUc -3'
miRNA:   3'- -CGGGGCGgCCU-GCGCC-------------Ua--AGGCCCAa -5'
5299 5' -62.6 NC_001798.1 + 31801 0.67 0.574347
Target:  5'- ----gGCCGGGCGCGGAgggaggacCCGGGg- -3'
miRNA:   3'- cggggCGGCCUGCGCCUaa------GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 5905 0.67 0.574347
Target:  5'- cGCCCCGaggcgggcCCGGACGgGGGg--CGGGc- -3'
miRNA:   3'- -CGGGGC--------GGCCUGCgCCUaagGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 21824 0.67 0.574347
Target:  5'- -gCCCGCgGGAugaCGCGGGccCCGGGc- -3'
miRNA:   3'- cgGGGCGgCCU---GCGCCUaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 83782 0.67 0.574347
Target:  5'- aGCgCCGgggggcCCGGACGCGGGgcCCGGa-- -3'
miRNA:   3'- -CGgGGC------GGCCUGCGCCUaaGGCCcaa -5'
5299 5' -62.6 NC_001798.1 + 150183 0.67 0.574347
Target:  5'- cGCCCCcuCCGcGGCGUGGGgggcggcaCCGGGg- -3'
miRNA:   3'- -CGGGGc-GGC-CUGCGCCUaa------GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 21941 0.67 0.564733
Target:  5'- gGCCCCGCCcccuuugggcGGAgcgcgggaugaCGCGGGccCCGGGc- -3'
miRNA:   3'- -CGGGGCGG----------CCU-----------GCGCCUaaGGCCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.