miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5299 5' -62.6 NC_001798.1 + 18213 0.7 0.378454
Target:  5'- aGCCUCGCCGGgggacgguGgGCGGGaaggguggaugguUUCCGGGg- -3'
miRNA:   3'- -CGGGGCGGCC--------UgCGCCU-------------AAGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 135784 0.7 0.403251
Target:  5'- cGgCCCGCCGGaggaggccguguGCGCGGc--CCGGGg- -3'
miRNA:   3'- -CgGGGCGGCC------------UGCGCCuaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 29537 0.7 0.403251
Target:  5'- cCCCCGCCGGggcGCGCGGcuaUUgGGGg- -3'
miRNA:   3'- cGGGGCGGCC---UGCGCCua-AGgCCCaa -5'
5299 5' -62.6 NC_001798.1 + 129350 0.7 0.403251
Target:  5'- aGCgCCCGCCGGGCcugGCGGGgcccCCGGa-- -3'
miRNA:   3'- -CG-GGGCGGCCUG---CGCCUaa--GGCCcaa -5'
5299 5' -62.6 NC_001798.1 + 81743 0.7 0.414782
Target:  5'- gGUCCCGCCGGACGCGugccaaaucgcgcgcGcc-CCGGGc- -3'
miRNA:   3'- -CGGGGCGGCCUGCGC---------------CuaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 34827 0.7 0.418949
Target:  5'- cGCUCCGCCGGGgGCccgggccGGAccgCCGGGc- -3'
miRNA:   3'- -CGGGGCGGCCUgCG-------CCUaa-GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 86889 0.69 0.428205
Target:  5'- uCCgCCGCCGGgaaccccgGCGUGGAgcgCCGGGc- -3'
miRNA:   3'- cGG-GGCGGCC--------UGCGCCUaa-GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 41458 0.69 0.428205
Target:  5'- uGCCCCGCCGGGgGgGGcggUCggCGGGc- -3'
miRNA:   3'- -CGGGGCGGCCUgCgCCua-AG--GCCCaa -5'
5299 5' -62.6 NC_001798.1 + 23997 0.69 0.436723
Target:  5'- uGCUguacaCGCCGGACGCGGAggcgaUGGGg- -3'
miRNA:   3'- -CGGg----GCGGCCUGCGCCUaag--GCCCaa -5'
5299 5' -62.6 NC_001798.1 + 130300 0.69 0.436723
Target:  5'- aGCgCCGaauGGGCGCGGug-CCGGGUg -3'
miRNA:   3'- -CGgGGCgg-CCUGCGCCuaaGGCCCAa -5'
5299 5' -62.6 NC_001798.1 + 81323 0.69 0.436723
Target:  5'- cCCCCGCaCGGcAgGCGGAc-CCGGGg- -3'
miRNA:   3'- cGGGGCG-GCC-UgCGCCUaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 151274 0.69 0.442744
Target:  5'- cGgCCCGCaCGGccgccucggccuccACGCGGGU-CCGGGg- -3'
miRNA:   3'- -CgGGGCG-GCC--------------UGCGCCUAaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 116180 0.69 0.445339
Target:  5'- aCCCUGCCGGGCcCGGAg-CUGGGc- -3'
miRNA:   3'- cGGGGCGGCCUGcGCCUaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 2994 0.69 0.452299
Target:  5'- gGCCCgCGggccCCGGGCGCGGGggcgcggcgggCCGGGc- -3'
miRNA:   3'- -CGGG-GC----GGCCUGCGCCUaa---------GGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 149658 0.69 0.454048
Target:  5'- gGCCgggCGCCGGGuCGCGGGccCCGGGc- -3'
miRNA:   3'- -CGGg--GCGGCCU-GCGCCUaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 25603 0.69 0.454048
Target:  5'- gGCCgCGCCGGGgGCGGGccccccCCGGaGUg -3'
miRNA:   3'- -CGGgGCGGCCUgCGCCUaa----GGCC-CAa -5'
5299 5' -62.6 NC_001798.1 + 29400 0.69 0.46285
Target:  5'- gGCCgCGCCGG-CGgGGcg-CCGGGg- -3'
miRNA:   3'- -CGGgGCGGCCuGCgCCuaaGGCCCaa -5'
5299 5' -62.6 NC_001798.1 + 51131 0.69 0.47174
Target:  5'- cGCCgUCGCCGGGaggccCGCGGucaccCCGGGUc -3'
miRNA:   3'- -CGG-GGCGGCCU-----GCGCCuaa--GGCCCAa -5'
5299 5' -62.6 NC_001798.1 + 121293 0.69 0.47174
Target:  5'- cGCCCCGaCGGugGgGcGGccgcgaacUUCCGGGUc -3'
miRNA:   3'- -CGGGGCgGCCugCgC-CU--------AAGGCCCAa -5'
5299 5' -62.6 NC_001798.1 + 152999 0.69 0.47174
Target:  5'- aGCCggcgcggggcggUCGCCGGG-GCGGAgUCCGGGc- -3'
miRNA:   3'- -CGG------------GGCGGCCUgCGCCUaAGGCCCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.